Browse Element(s) Details


Os.51140.1.S1_at

Description gb:AK061094.1
DB_XREF= gi:32971112
TID=Os.51140.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A03, full insert sequence.
FL= gb:AK061094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0479011/11glycosyltransferase family 14 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04740OsAffx.16829.1.S1_s_at11/118+2359067..2359707expressed protein
LOC_Os08g04750NANA8+2362664..2363416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04760NANA8+2365652..2368088hypothetical protein
LOC_Os08g04770OsAffx.29036.1.S1_at11/118+2375811..2378817AMP-binding enzyme family protein, expressed
LOC_Os08g04780Os.7610.1.S1_a_at11/118+2379191..2382932amine oxidase, flavin-containing family protein, expressed
LOC_Os08g04790Os.8351.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04790Os.51140.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04800OsAffx.16830.1.S1_at11/118+2399689..2401176Lipase family protein, expressed
LOC_Os08g04810Os.6057.1.A1_at11/118+2405983..2412333serine esterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51140.1.S1_at--819--3351Chr08:2384210..2384234 (25 bp)
CACGCAGGATGGTCAGTGCTCTGAT
LOC_Os08g04790
Os.51140.1.S1_at--527--4811Chr08:2384227..2384251 (25 bp)
GCTCTGATTACTCTGCTGAATGAAT
LOC_Os08g04790
Os.51140.1.S1_at--108--2051Chr08:2384260..2384284 (25 bp)
ACTTTGTGTGTTGTGCTTGTTCTAG
LOC_Os08g04790
Os.51140.1.S1_at--227--8971Chr08:2384313..2384337 (25 bp)
TGAAATGCCACCGAATTTGCCTCTA
LOC_Os08g04790
Os.51140.1.S1_at--519--10291Chr08:2384328..2384352 (25 bp)
TTTGCCTCTAGGATTGTCTACTTGA
LOC_Os08g04790
Os.51140.1.S1_at--803--2311Chr08:2384357..2384381 (25 bp)
AAAGGATGGTCAGTGTTCTTCAGGT
LOC_Os08g04790
Os.51140.1.S1_at--447--171Chr08:2384432..2384456 (25 bp)
ATTTTCTTAGCTATGGAGTGCCACT
LOC_Os08g04790
Os.51140.1.S1_at--1068--7931Chr08:2384474..2384498 (25 bp)
GGATTTGCCTCTAGGATAGCATTGT
LOC_Os08g04790
Os.51140.1.S1_at--1129--5171Chr08:2384507..2384531 (25 bp)
GCAATTAGCATCTGTGTAACTGTAA
LOC_Os08g04790
Os.51140.1.S1_at--268--2251Chr08:2384537..2384561 (25 bp)
AAATTCGTTGTGTAAGCTATAGCCT
LOC_Os08g04790
Os.51140.1.S1_at--273--6491Chr08:2384566..2384590 (25 bp)
GATAGCTCAACTAGATTTCTTTGCA
LOC_Os08g04790
Target Sequence 
CACGCAGGATGGTCAGTGCTCTGATTACTCTGCTGAATGAATTTTAGCTTACTTTGTGTGTTGTGCTTGTTCTAGAATGT
AGAGATGTTTTGTTAATTAGCTATGAAATGCCACCGAATTTGCCTCTAGGATTGTCTACTTGATGACAAAGGATGGTCAG
TGTTCTTCAGGTCAGCTGAATTTCAATTACATATTGTTGTGTTTGTTCTAGGATGTGGAGATATTTTCTTAGCTATGGAG
TGCCACTGAAAAGATTGGAATTTAGGATTTGCCTCTAGGATAGCATTGTTGAGGGCAGCAATTAGCATCTGTGTAACTGT
AATGGTTAAATTCGTTGTGTAAGCTATAGCCTATCTGATAGCTCAACTAGATTTCTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis