Browse Element(s) Details


OsAffx.29036.1.S1_at

Description tigr:9636.m00403
TID=OsAffx.29036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AMP-binding enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0477011/11AMP-binding enzyme family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04730NANA8+2351089..2354941retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04740OsAffx.16829.1.S1_s_at11/118+2359067..2359707expressed protein
LOC_Os08g04750NANA8+2362664..2363416retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04760NANA8+2365652..2368088hypothetical protein
LOC_Os08g04770OsAffx.29036.1.S1_at11/118+2375811..2378817AMP-binding enzyme family protein, expressed
LOC_Os08g04780Os.7610.1.S1_a_at11/118+2379191..2382932amine oxidase, flavin-containing family protein, expressed
LOC_Os08g04790Os.8351.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04790Os.51140.1.S1_at11/118+2383385..2386651glycosyltransferase family 14 protein, putative, expressed
LOC_Os08g04800OsAffx.16830.1.S1_at11/118+2399689..2401176Lipase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009698biological_processphenylpropanoid metabolism
GO:0005777cellular_componentperoxisome
GO:0004321molecular_functionfatty-acyl-CoA synthase activity
GO:0016207molecular_function4-coumarate-CoA ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29036.1.S1_at--439--1191Chr08:2377482..2377506 (25 bp)
AGTAGTTCATGTTTGCCTCCAGGCT
LOC_Os08g04770
OsAffx.29036.1.S1_at--400--8331Chr08:2377522..2377546 (25 bp)
GGCTCCATGGCCCAGGAATCATGAA
LOC_Os08g04770
OsAffx.29036.1.S1_at--48--871Chr08:2377821..2377845 (25 bp)
ATGGCTGGTTGCGTACCGGAGACAT
LOC_Os08g04770
OsAffx.29036.1.S1_at--657--1771Chr08:2377835..2377859 (25 bp)
ACCGGAGACATTGCCTACTTTGATC
LOC_Os08g04770
OsAffx.29036.1.S1_at--284--6411Chr08:2377856..2377880 (25 bp)
GATCTGGATGGCTACCTATACATTG
LOC_Os08g04770
OsAffx.29036.1.S1_at--743--3591Chr08:2377876..2377900 (25 bp)
CATTGTAGGCCGCTTGAAGGACACA
LOC_Os08g04770
OsAffx.29036.1.S1_at--1096--2711Chr08:2378120..2378144 (25 bp)
AAGAAGTTTTGATCCACCACCCTGA
LOC_Os08g04770
OsAffx.29036.1.S1_at--68--6051Chr08:2378337..2378361 (25 bp)
GAGATCTGGAAGCAACCTTTCTTGT
LOC_Os08g04770
OsAffx.29036.1.S1_at--220--8651Chr08:2378379..2378679 (25 bp)
TGTGGCCAAGCAGGTTGCTCCATAT
LOC_Os08g04770
OsAffx.29036.1.S1_at--250--8671Chr08:2378703..2378727 (25 bp)
TGTGGAGGCAATTCCCAAGTCACCT
LOC_Os08g04770
OsAffx.29036.1.S1_at--442--951Chr08:2378755..2378779 (25 bp)
AGGAACTCGCATGACACTGCTGCTG
LOC_Os08g04770
Target Sequence 
AGTAGTTCATGTTTGCCTCCAGGCTTCTCAGGGGAGCTATGGCTCCATGGCCCAGGAATCATGAAAGGTTACTTGAGTGA
TGATGATGATGCCTGCACGAGAAAGGATGGCTGGTTGCGTACCGGAGACATTGCCTACTTTGATCTGGATGGCTACCTAT
ACATTGTAGGCCGCTTGAAGGACACAATCAAGTACAAAGGATTTCAGATAGCTCCGGGGGACTTGGAAGAAGTTTTGATC
CACCACCCTGAAATTCTTGATGTTGCTGTGACATCTGCTGAGGATGAAGAAGCTGGAGAGATACCAGTAGCTTTTGTGGT
GAGGAGATCTGGAAGCAACCTTTCTTGTAAGCAAGTGATGGAGTATGTGGCCAAGCAGGTTGCTCCATATAAGAGAGTGA
GGAAGGTGGTATTTGTGGAGGCAATTCCCAAGTCACCTGCTGGAAAAGTTTTGAGGAGGCTTCTCAGGAACTCGCATGAC
ACTGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis