Browse Element(s) Details


Os.11800.1.S1_s_at

Description gb:AK108373.1
DB_XREF= gi:32993582
TID=Os.11800.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11800 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D10, full insert sequence.
FL= gb:AK108373.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5010011/11multidrug resistance protein 1 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed
LOC_Os01g50090NANA1+29109928..29112744retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g50100Os.11800.1.S1_s_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.39411.1.A1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50100Os.11800.1.S1_at11/111+29112956..29120147multidrug resistance protein 1 homolog, putative, expressed
LOC_Os01g50110Os.55528.1.S1_at11/111+29123363..29124496Myb-related protein Zm38, putative, expressed
LOC_Os01g50120Os.49669.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50120Os.57098.1.S1_at11/111+29125731..29131287expressed protein
LOC_Os01g50140NANA1+29135092..29135604transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11800.1.S1_s_at--531--1351Chr01:29113876..29113900 (25 bp)
AGAGATCACTGCTGTGGCCAAGGCA
LOC_Os01g50100
Os.11800.1.S1_s_at--988--8651Chr01:29113864..29113888 (25 bp)
TGTGGCCAAGGCAGCAAACGCCCAT
LOC_Os01g50100
Os.11800.1.S1_s_at--640--5051Chr01:29113854..29113878 (25 bp)
GCAGCAAACGCCCATGAGTTCGTAT
LOC_Os01g50100
Os.11800.1.S1_s_at--38--711Chr01:29113841..29113865 (25 bp)
ATGAGTTCGTATCAAGCCTGCCACA
LOC_Os01g50100
Os.11800.1.S1_s_at--129--9391Chr01:29113835..29113859 (25 bp)
TCGTATCAAGCCTGCCACAAGGATA
LOC_Os01g50100
Os.11800.1.S1_s_at--645--9831Chr01:29113733..29113757 (25 bp)
TAAAGGACCCTAAGATACTGCTACT
LOC_Os01g50100
Os.11800.1.S1_s_at--589--1811Chr01:29113727..29113751 (25 bp)
ACCCTAAGATACTGCTACTTGATGA
LOC_Os01g50100
Os.11800.1.S1_s_at--1018--5451Chr01:29113674..29113698 (25 bp)
GAACGTGTTGTTCAAGATGCATTGG
LOC_Os01g50100
Os.11800.1.S1_s_at--413--8791Chr01:29113666..29113690 (25 bp)
TGTTCAAGATGCATTGGATCGAGTC
LOC_Os01g50100
Os.11800.1.S1_s_at--307--5711Chr01:29113630..29113654 (25 bp)
GACTACCATTGTAGTGGCACACCGC
LOC_Os01g50100
Os.11800.1.S1_s_at--270--10211Chr01:29113435..29113459 (25 bp)
TATTTAGCCATAAATTCTAGCTACT
LOC_Os01g50100
Target Sequence 
AGAGATCACTGCTGTGGCCAAGGCAGCAAACGCCCATGAGTTCGTATCAAGCCTGCCACAAGGATACGACACAGTGGTAG
GTGAGAAAGGGGTGCAACTATCTGGTGGGCAAAAACAGAGGGTAGCAATTGCAAGGGCCATCCTAAAGGACCCTAAGATA
CTGCTACTTGATGAGGCAACCAGTGCTCTAGATGCAGAATCAGAACGTGTTGTTCAAGATGCATTGGATCGAGTCATGGT
CAACAGGACTACCATTGTAGTGGCACACCGCCTCTCCACAATCAAAGGGGCTGATATGATTGCAGTCCTCAAGGAAGGAA
AAATTGCAGAAAAAGGAAAGCATGAAGCACTATTGCGGATCAAGGATGGTGCATATGCTTCACTTGTACAACTCCGCTCT
AATTCCGAGTAAAATGATGTATATTTTGATGGTGTATAACTTATTTAGCCATAAATTCTAGCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11800.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis