Browse Element(s) Details


Os.12351.1.S1_at

Description gb:AK061675.1
DB_XREF= gi:32971693
TID=Os.12351.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full insert sequence.
FL= gb:AK121307.1 gb:AK064813.1 gb:AK061675.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1687011/11Piwi domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16850NANA1+9610432..9622035retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16860OsAffx.2022.1.S1_at11/111+9623957..9624974Argonaute AGO1 protein, putative
LOC_Os01g16870Os.12351.1.S1_at11/111+9628112..9635659Piwi domain containing protein, expressed
LOC_Os01g16880NANA1+9641271..9650270expressed protein
LOC_Os01g16890Os.206.1.S1_at11/111+9654761..965805760S ribosomal protein L30, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006342biological_processchromatin silencing
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12351.1.S1_at--552--3091Chr01:9629232..9629549 (25 bp)
AATAACGTTCCTCCTGGTACTGTTG
LOC_Os01g16870
Os.12351.1.S1_at--1030--7511Chr01:9629412..9629436 (25 bp)
GTGGACAACGCAGTCTGTCATCCAA
LOC_Os01g16870
Os.12351.1.S1_at--239--8431Chr01:9628756..9628780 (25 bp)
GGCCTACACATTATCATATCCTTCA
LOC_Os01g16870
Os.12351.1.S1_at--1120--231Chr01:9628469..9628585 (25 bp)
ATATCAGTCGTTGCACCCATTTGCT
LOC_Os01g16870
Os.12351.1.S1_at--527--1691Chr01:9628418..9628442 (25 bp)
AGCCAGTTCATCAAGTTCGACGAGA
LOC_Os01g16870
Os.12351.1.S1_at--541--3291Chr01:9628314..9628338 (25 bp)
CAAAGTCAGGAGCTCCATGTTCTTC
LOC_Os01g16870
Os.12351.1.S1_at--123--4771Chr01:9628272..9628296 (25 bp)
GCTGCTATGTTATGGCCTGAACTTG
LOC_Os01g16870
Os.12351.1.S1_at--296--10411Chr01:9628186..9628210 (25 bp)
TTATTAGGCTGGATGCCGCACTTCT
LOC_Os01g16870
Os.12351.1.S1_at--309--4511Chr01:9628172..9628196 (25 bp)
GCCGCACTTCTGAACCTGTTAGGAT
LOC_Os01g16870
Os.12351.1.S1_at--741--991Chr01:9628152..9628176 (25 bp)
AGGATAACTACTGAACCTGTCCATC
LOC_Os01g16870
Os.12351.1.S1_at--240--8711Chr01:9628135..9628159 (25 bp)
TGTCCATCTTAATCGCAGCTTGTTC
LOC_Os01g16870
Target Sequence 
AATAACGTTCCTCCTGGTACTGTTGTGGACAACGCAGTCTGTCATCCAAGGAACAATGACTTCTACATGTGTGCGCACGC
TGGAATGATTGGAACTACAAGGCCTACACATTATCATATCCTTCATGATGAGATAGGCTTCTCTGNCTGACGATCTTCAG
GAGTTGGTCCACTCCCTTTCCTATGTCTACCAGAGGAGCACTACAGCCATATCAGTCGTTGCACCCATTTGCTACGCGCA
TCTCGCTGCTGCTCAGGTCAGCCAGTTCATCAAGTTCGACGAGATGTCGGAGACGTCGTCGAGCCATGGTGGCCATACCT
CGGCGGGCAGCGCTCCGGTGCNCGAGCTGCCTCGCCTGCATAACAAAGTCAGGAGCTCCATGTTCTTCTGCTGAGCAGCC
GCTTGGCTGCTATGTTATGGCCTGAACTTGTGGATGTTTTGGTAGTCTTGTTTATGTCGTGTTTGTTTAAGTACCAGCTG
GGGGGTGGATGTTATTAGGCTGGATGCCGCACTTCTGAACCTGTTAGGATAACTACTGAACCTGTCCATCTTAATCGCAG
CTTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis