Browse Element(s) Details


Os.12606.1.S1_at

Description gb:AK071496.1
DB_XREF= gi:32981519
TID=Os.12606.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023096M09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096M09, full insert sequence.
FL= gb:AK071496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2863010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28600OsAffx.27853.1.S1_at11/116+16275334..16277038hypothetical protein
LOC_Os06g28610NANA6+16278723..16279220hypothetical protein
LOC_Os06g28620NANA6+16281070..16281570retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28630OsAffx.4953.1.S1_at11/116+16301036..16304077expressed protein
LOC_Os06g28630Os.12606.1.S1_at10/116+16301036..16304077expressed protein
LOC_Os06g28639NANA6+16307991..16308169NA
LOC_Os06g28648NANA6+16316198..16316691NA
LOC_Os06g28660NANA6+16320280..16326031retrotransposon protein, putative, unclassified
LOC_Os06g28670OsAffx.4954.1.S1_x_at11/116+16328397..16330326Polygalacturonase family protein, expressed
LOC_Os06g28670OsAffx.4954.1.S1_at11/116+16328397..16330326Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12606.1.S1_at--364--9751Chr06:16294315..16294339 (25 bp)
TAATTCATGCTGCTTGACCTTACAA
NONE
Os.12606.1.S1_at--374--2671Chr06:16303563..16303587 (25 bp)
AAGCCCCAGTGATGGTTGGTGCTCA
LOC_Os06g28630
Os.12606.1.S1_at--365--2511Chr06:16303623..16303647 (25 bp)
AACTTCAATTTCCAGCATCCAACAA
LOC_Os06g28630
Os.12606.1.S1_at--859--4771Chr06:16303712..16303736 (25 bp)
GCTGCTGTCCTAGCTGCTACAAAAT
LOC_Os06g28630
Os.12606.1.S1_at--677--151Chr06:16303772..16303796 (25 bp)
ATTATGATGAGCCTTCTTCTCCAGC
LOC_Os06g28630
Os.12606.1.S1_at--969--3091Chr06:16303865..16303889 (25 bp)
AATACTGTTGTTTGCGTCTTTCGTT
LOC_Os06g28630
Os.12606.1.S1_at--677--7171Chr06:16303903..16303927 (25 bp)
GTCTCCATGTCTACGTGTGTTTGTA
LOC_Os06g28630
Os.12606.1.S1_at--713--8771Chr06:16303920..16303944 (25 bp)
TGTTTGTAGTATTGTGACCCACCCA
LOC_Os06g28630
Os.12606.1.S1_at--713--3391Chr06:16303988..16304012 (25 bp)
CAGCTGATGGCCGATGTACGTTAAT
LOC_Os06g28630
Os.12606.1.S1_at--1142--10491Chr06:16304008..16304032 (25 bp)
TTAATTGTCCGTCTTCTCTGCATGT
LOC_Os06g28630
Os.12606.1.S1_at--295--10151Chr06:16304050..16304074 (25 bp)
TATCCAGTTTGTGCTGTGCTGCATT
LOC_Os06g28630
Target Sequence 
TAATTCATGCTGCTTGACCTTACAAGGTACCTCAAGCCCCAGTGATGGTTGGTGCTCACCTAGGGCTAGCCTCAAGCTCC
AGCTAGCTCCACCAACTTCAATTTCCAGCATCCAACAAGTACCCTACATACACTAGATTATATACATAACATGGTTGTGA
TCGTGATGGAGACGACGATCCTGCTGCTGTCCTAGCTGCTACAAAATCTTTATTACTCCGATGACGGATGACGACGACGA
TGATTATGATGAGCCTTCTTCTCCAGCTTGCTAGAAGGCGAATTCAGAAGTAATAAGGAGAAGGGGTCCGAGACATCATC
AACCTCCCCATGGGGAATACTGTTGTTTGCGTCTTTCGTTGTACTGCTCTCGTGTCTCCATGTCTACGTGTGTTTGTAGT
ATTGTGACCCACCCACGAGGCTTGTCGATCGTTGGCTGCCGGCTGGAGATACGCTGGCCAGCTGATGGCCGATGTACGTT
AATTGTCCGTCTTCTCTGCATGTCTAATCTATCAAATATCTATCCAGTTTGTGCTGTGCTGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis