Browse Element(s) Details

Os.12740.1.S1_x_at

Description

gb:AK068331.1
DB_XREF= gi:32978349
TID=Os.12740.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145M04, full insert sequence.
FL= gb:AK068331.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os11g10420	11/11	Phosphatidylinositol 4-kinase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os11g10370	OsAffx.7062.1.S1_at	11/11	11	+	5623357..5624506	F-box domain containing protein
LOC_Os11g10384	OsAffx.7063.1.S1_at	11/11	11	+	5627299..5635856	transposon protein, putative, unclassified
LOC_Os11g10400	Os.52471.1.S1_at	11/11	11	+	5641128..5643884	F-box domain containing protein, expressed
LOC_Os11g10410	NA	NA	11	+	5645202..5647405	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10420	OsAffx.7064.1.S1_at	11/11	11	+	5648584..5658603	Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420	Os.12740.1.S1_x_at	11/11	11	+	5648584..5658603	Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420	Os.19722.1.S1_at	11/11	11	+	5648584..5658603	Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420	Os.19722.1.S2_at	11/11	11	+	5648584..5658603	Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420	Os.19722.1.S1_s_at	10/11	11	+	5648584..5658603	Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10430	OsAffx.30915.1.S1_at	11/11	11	+	5668408..5672123	aminotransferase, putative
LOC_Os11g10430	OsAffx.30915.1.S1_x_at	11/11	11	+	5668408..5672123	aminotransferase, putative
LOC_Os11g10434	Os.53198.1.S1_at	10/11	11	+	5675569..5679503	expressed protein
LOC_Os11g10440	NA	NA	11	+	5683496..5687241	transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0046489	biological_process	phosphoinositide biosynthesis
GO:0005634	cellular_component	nucleus
GO:0004428	molecular_function	inositol or phosphatidylinositol kinase activity
GO:0004430	molecular_function	1-phosphatidylinositol 4-kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12740.1.S1_x_at--206--131	1	Chr11:5657879..5657903 (25 bp)	AGAGACTAAGCATTGGACCTAAGGT	LOC_Os11g10420
Os.12740.1.S1_x_at--24--585	1	Chr11:5657864..5657888 (25 bp)	GACCTAAGGTGCGTGATGCAGCATC	LOC_Os11g10420
Os.12740.1.S1_x_at--65--789	1	Chr11:5657792..5657816 (25 bp)	GGTTCTTTAAAAGGCTGCTTAGAGA	LOC_Os11g10420
Os.12740.1.S1_x_at--258--531	1	Chr11:5657733..5657757 (25 bp)	GAAGGATTTTTCAAGAGGCTGCTTA	LOC_Os11g10420
Os.12740.1.S1_x_at--786--929	1	Chr11:5657660..5657684 (25 bp)	TCCGCAGGTTGCTTAGGGACAGCAA	LOC_Os11g10420
Os.12740.1.S1_x_at--55--1045	1	Chr11:5657648..5657672 (25 bp)	TTAGGGACAGCAAGGACGAGGACAT	LOC_Os11g10420
Os.12740.1.S1_x_at--793--577	1	Chr11:5657634..5657658 (25 bp)	GACGAGGACATGGAATTGACACCAA	LOC_Os11g10420
Os.12740.1.S1_x_at--866--1073	1	Chr11:5657619..5657643 (25 bp)	TTGACACCAAGCTCAGAGGGTTTAT	LOC_Os11g10420
Os.12740.1.S1_x_at--187--1021	1	Chr11:5657597..5657621 (25 bp)	TATTGAAGCGACTGTTCCGTGATAA	LOC_Os11g10420
Os.12740.1.S1_x_at--483--291	1	Chr11:5657544..5657568 (25 bp)	AAGGAAGGCTTTTTCCGCAGGATAT	LOC_Os11g10420
Os.12740.1.S1_x_at--271--879	1	Chr11:5657434..5657458 (25 bp)	TGATAAAGAAGGGTTCTTCCGCAAA	LOC_Os11g10420

Target Sequence

AGAGACTAAGCATTGGACCTAAGGTGCGTGATGCAGCATCGTTCTTTNGGCGATCCGTGGAGAAGGATGATGAGCAGGAC
AAGGAAGGGTTCTTTAAAAGGCTGCTTAGAGACAGCAAGGACAAGGAGGAAGAGGATGGTGATAAGGAAGGATTTTTCAA
GAGGCTGCTTAGTAAGGAGAAAGAGAACGAGGAGGAAGAAGGAGATAGAGATGGTTTCNTCCGCAGGTTGCTTAGGGACA
GCAAGGACGAGGACATGGAATTGACACCAAGCTCAGAGGGTTTATTGAAGCGACTGTTCCGTGATAAGGAAGATAGGCAG
GGTGATGATGAAGAAAAGGAAGGCTTTTTCCGCAGGATATTTAAGGATAAGAATGAGGAGAGGAGAGAGAGCCTGCATGG
AAGGCATGGGGATGAGGAAAGAGTGGGCAAGAGCTTAGAGGATGATGATAAAGAAGGGTTCTTCCGCAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis