Browse Element(s) Details


OsAffx.7064.1.S1_at

Description tigr:9639.m00983
TID=OsAffx.7064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphatidylinositol 4-kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1042011/11Phosphatidylinositol 4-kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10370OsAffx.7062.1.S1_at11/1111+5623357..5624506F-box domain containing protein
LOC_Os11g10384OsAffx.7063.1.S1_at11/1111+5627299..5635856transposon protein, putative, unclassified
LOC_Os11g10400Os.52471.1.S1_at11/1111+5641128..5643884F-box domain containing protein, expressed
LOC_Os11g10410NANA11+5645202..5647405retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g10420OsAffx.7064.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.12740.1.S1_x_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S2_at11/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10420Os.19722.1.S1_s_at10/1111+5648584..5658603Phosphatidylinositol 4-kinase, putative, expressed
LOC_Os11g10430OsAffx.30915.1.S1_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10430OsAffx.30915.1.S1_x_at11/1111+5668408..5672123aminotransferase, putative
LOC_Os11g10434Os.53198.1.S1_at10/1111+5675569..5679503expressed protein
LOC_Os11g10440NANA11+5683496..5687241transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046489biological_processphosphoinositide biosynthesis
GO:0005634cellular_componentnucleus
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0004430molecular_function1-phosphatidylinositol 4-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7064.1.S1_at--862--3971Chr11:5649289..5649421 (25 bp)
CGGGATAGCGCAGGCTATTGGCGCC
LOC_Os11g10420
OsAffx.7064.1.S1_at--296--6651Chr11:5649167..5649216 (25 bp)
GTTGAGGTCATACTAGGAGCCCATT
LOC_Os11g10420
OsAffx.7064.1.S1_at--1149--7071Chr11:5649161..5649210 (25 bp)
GTCATACTAGGAGCCCATTTTACTG
LOC_Os11g10420
OsAffx.7064.1.S1_at--249--8091Chr11:5649064..5649085 (22 bp)
GGAGCCATACAAGCCGCAAAGTGAT
LOC_Os11g10420
OsAffx.7064.1.S1_at--597--1671Chr11:5648788..5649074 (25 bp)
AGCCGCAAAGTGATAGCATATGTTT
LOC_Os11g10420
OsAffx.7064.1.S1_at--424--8631Chr11:5648764..5648788 (25 bp)
TGGGAATTTTCTCCCAGCTTTGTCA
LOC_Os11g10420
OsAffx.7064.1.S1_at--644--3131Chr11:5648760..5648784 (25 bp)
AATTTTCTCCCAGCTTTGTCAACAT
LOC_Os11g10420
OsAffx.7064.1.S1_at--1076--4871Chr11:5648748..5648772 (25 bp)
GCTTTGTCAACATTACACCGCTTGA
LOC_Os11g10420
OsAffx.7064.1.S1_at--510--131Chr11:5648737..5648761 (25 bp)
ATTACACCGCTTGAAAACTGGAAAT
LOC_Os11g10420
OsAffx.7064.1.S1_at--471--2251Chr11:5648716..5648740 (25 bp)
AAATATTTGAGAGTGCTTCCATCTG
LOC_Os11g10420
OsAffx.7064.1.S1_at--924--9231Chr11:5648699..5648723 (25 bp)
TCCATCTGGTAATGTATCTGGACAT
LOC_Os11g10420
Target Sequence 
CGGGATAGCGCAGGCTATTGGCGCCTGCAATGCAACTTGCATAGCATTTCTCCCATTTGATGAGGTTGAGAATTGTATAG
TCGTCGGCAGTTATCTAGTTGAGGTCATACTAGGAGCCCATTTTACTGGAATTCGGGACCCCCGAGCTGCATTGCTGTAC
AGACAATTGATTGACGTAGCTTGGACAGGATCTAGGAGAGGATGGAGCCATACAAGCCGCAAAGTGATAGCATATGTTTG
GGAATTTTCTCCCAGCTTTGTCAACATTACACCGCTTGAAAACTGGAAATATTTGAGAGTGCTTCCATCTGGTAATGTAT
CTGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis