Browse Element(s) Details


Os.12948.1.S1_at

Description gb:AK070746.1
DB_XREF= gi:32980769
TID=Os.12948.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064M01, full insert sequence.
FL= gb:AK070746.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0842010/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08400OsAffx.11941.1.S1_x_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.11941.1.S1_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.15919.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08410Os.54001.1.S1_at11/112+4486528..4489406chorismate mutase family protein, expressed
LOC_Os02g08420Os.12948.1.S1_at10/112+4497112..4500122NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016621molecular_functioncinnamoyl-CoA reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12948.1.S1_at--947--8031NONE
GGAGTATCCGATCCCTACAAGGTGC
NONE
Os.12948.1.S1_at--128--8291Chr02:4499518..4499542 (25 bp)
GGCATCAAGTTCACACCTGTGCATG
LOC_Os02g08420
Os.12948.1.S1_at--1114--2151Chr02:4499530..4499554 (25 bp)
ACACCTGTGCATGAATACCTGTATG
LOC_Os02g08420
Os.12948.1.S1_at--7--5391Chr02:4499554..4499578 (25 bp)
GAAGCAGTGAAGTCCCTGGAAGACA
LOC_Os02g08420
Os.12948.1.S1_at--662--2911Chr02:4499853..4499876 (24 bp)
AAGGAGCTTCACAGGCAAAGTTCTC
LOC_Os02g08420
Os.12948.1.S1_at--322--3871Chr02:4499903..4499927 (25 bp)
CTGATGTCGAAGCTTTGATAGGTTT
LOC_Os02g08420
Os.12948.1.S1_at--299--8991Chr02:4499929..4499953 (25 bp)
TGAAGAAATCCCTTTTGACCGACGG
LOC_Os02g08420
Os.12948.1.S1_at--94--10771Chr02:4499943..4499967 (25 bp)
TTGACCGACGGCTTATCTCAGAGTT
LOC_Os02g08420
Os.12948.1.S1_at--238--3751Chr02:4499959..4499983 (25 bp)
CTCAGAGTTTACATAGCTCACTAAT
LOC_Os02g08420
Os.12948.1.S1_at--372--6571Chr02:4499986..4500010 (25 bp)
GATTCAGTTCGATATCTCTGGCAAA
LOC_Os02g08420
Os.12948.1.S1_at--499--7651Chr02:4500023..4500047 (25 bp)
GGGAGTTCATCCTAAAAGCAGATAA
LOC_Os02g08420
Target Sequence 
GGAGTATCCGATCCCTACAAGGTGCAGGGATGAGATAAATCCACCAAAGAAGGGCTACAAGTTCACAAACCAACCTCTNN
AGGATCTAGGCATCAAGTTCACACCTGTGCATGAATACCTGTATGAAGCAGTGAAGTCCCTGGAAGACAAAGGATTCATC
AAGAAGACCTCCAATACCAAGGAGCTTCACAGGCAAAGTTCTCCCCCTCAAAATTCACCCGCGAGCATGCTGATGTCGAA
GCTTTGATAGGTTTNTGAAGAAATCCCTTTTGACCGACGGCTTATCTCAGAGTTTACATAGCTCACTAATTTGATTCAGT
TCGATATCTCTGGCAAATTGCCAATTTNTGGGAGTTCATCCTAAAAGCAGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis