Browse Element(s) Details


Os.54001.1.S1_at

Description gb:AK101220.1
DB_XREF= gi:32986429
TID=Os.54001.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031C20, full insert sequence.
FL= gb:AK101220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0841011/11chorismate mutase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08380Os.16502.1.S1_at11/112+4460297..4463658expressed protein
LOC_Os02g08390OsAffx.25936.1.S1_s_at8/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.7.S1_s_at7/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.2.S1_x_at4/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.1.S1_at2/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08390OsAffx.25936.5.S1_x_at1/112+4465775..4469430transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g08400OsAffx.11941.1.S1_x_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.11941.1.S1_at11/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.16049.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08400OsAffx.15919.1.S1_x_at1/112+4481869..4483467acetyltransferase, GNAT family protein, expressed
LOC_Os02g08410Os.54001.1.S1_at11/112+4486528..4489406chorismate mutase family protein, expressed
LOC_Os02g08420Os.12948.1.S1_at10/112+4497112..4500122NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009096biological_processaromatic amino acid family biosynthesis, anthranilate pathway
GO:0009607biological_processresponse to biotic stimulus
GO:0016089biological_processaromatic amino acid family biosynthesis, shikimate pathway
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004106molecular_functionchorismate mutase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54001.1.S1_at--859--4491Chr02:4487103..4487127 (25 bp)
GCCGTCTTGACTGATTCGCCAAAAT
LOC_Os02g08410
Os.54001.1.S1_at--307--5491Chr02:4486994..4487018 (25 bp)
GAACAGCTAACAGCGGTGACTTGCT
LOC_Os02g08410
Os.54001.1.S1_at--501--7371Chr02:4486979..4487003 (25 bp)
GTGACTTGCTGTAGAATTTCCGGTA
LOC_Os02g08410
Os.54001.1.S1_at--829--6891Chr02:4486952..4486976 (25 bp)
GTATCTTGGATCTTTCTTCATCTCC
LOC_Os02g08410
Os.54001.1.S1_at--133--9291Chr02:4486930..4486954 (25 bp)
TCCGTTTTCGGAGCTGAGACATATA
LOC_Os02g08410
Os.54001.1.S1_at--942--6231Chr02:4486679..4486703 (25 bp)
GATGGCAATGATCTGCAACCCAAAA
LOC_Os02g08410
Os.54001.1.S1_at--979--9611Chr02:4486651..4486675 (25 bp)
TCATCCTACCTAACTGTGGTGGCTG
LOC_Os02g08410
Os.54001.1.S1_at--298--6131Chr02:4486621..4486645 (25 bp)
GAGGGCCTGGTGAATTCCCAGCAAA
LOC_Os02g08410
Os.54001.1.S1_at--1072--4751Chr02:4486593..4486617 (25 bp)
GCTGCAACTCCAGTTTCTGTAACAA
LOC_Os02g08410
Os.54001.1.S1_at--740--7051Chr02:4486565..4486589 (25 bp)
GTAACTCCTGTTATTATATCACCAT
LOC_Os02g08410
Os.54001.1.S1_at--535--3571Chr02:4486543..4486567 (25 bp)
CATAGTTTTGTGCTACTTCTTGGTA
LOC_Os02g08410
Target Sequence 
GCCGTCTTGACTGATTCGCCAAAATATTTTCAGCTGCAAATATGATGAACACAATTATGTAAGCACATATAAATAGACTT
ATTGAATGTGGCATGAGGAAATCCATCAAGAACAGCTAACAGCGGTGACTTGCTGTAGAATTTCCGGTACTGTATCTTGG
ATCTTTCTTCATCTCCGTTTTCGGAGCTGAGACATATAGGGCCTGTTTGGTACAGCTCTAACTCCTAAATTTAGCTCCAA
GAGTTGGGTCTGGAGTGGAGTTGTGGAGCTGCCTAAACCCAGCTCCACAACTCTAGTTCATTTTGTGAGAGAGCTCCACC
CAGCTCCACTCCCAGTTTTGGTGGAGCTGAAACTGTTTGGCTGAGCTCCAGCTCCAGGAGGGGTAGAGCTGGAGCTGGAG
CTGTGCCAAAACAGGCCCATAGATTGATGGCAATGATCTGCAACCCAAAAGGTTCATCCTACCTAACTGTGGTGGCTGAT
ACTGAGGGCCTGGTGAATTCCCAGCAAAGATGCTGCAACTCCAGTTTCTGTAACAATCTGTAACTCCTGTTATTATATCA
CCATAGTTTTGTGCTACTTCTTGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis