Browse Element(s) Details


Os.13012.1.S1_at

Description gb:AY043215.1
DB_XREF= gi:15741045
GEN=tb1
TID=Os.13012.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13012 (NCBI UniGene Cluster)
DEF=Oryza sativa teosinte branched1 protein (tb1) mRNA, complete cds.
PROD=teosinte branched1 protein
FL= gb:AK107083.1 gb:AY043215.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4988011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49850OsAffx.13427.1.S1_at11/113+28356958..28357317hypothetical protein
LOC_Os03g49860OsAffx.25652.1.S1_at11/113+28358944..28361845hypothetical protein
LOC_Os03g49870NANA3+28363720..28366967transposon protein, putative, Mariner sub-class
LOC_Os03g49880Os.13012.1.S1_at11/113+28377677..28379633TCP family transcription factor containing protein, expressed
LOC_Os03g49890OsAffx.3559.1.S1_at11/113+28394232..28394540hypothetical protein
LOC_Os03g49900Os.10336.1.S1_at11/113+28397991..28405566zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13012.1.S1_at--760--7271Chr03:28379102..28379126 (25 bp)
GTCCACCAATCTTGTGAGCACCGAA
LOC_Os03g49880
Os.13012.1.S1_at--1161--6311Chr03:28379183..28379207 (25 bp)
GATGCAAGAAATCTCGGCGGCTAGC
LOC_Os03g49880
Os.13012.1.S1_at--223--4611Chr03:28379215..28379239 (25 bp)
GCGACGTGATCATGGCGTTCGCCAA
LOC_Os03g49880
Os.13012.1.S1_at--423--4751Chr03:28379344..28379368 (25 bp)
GCTGATGTGATCATCCATCCACACA
LOC_Os03g49880
Os.13012.1.S1_at--304--6991Chr03:28379387..28379411 (25 bp)
GTACGGCACTAAGATCGAACTCCTG
LOC_Os03g49880
Os.13012.1.S1_at--360--531Chr03:28379400..28379424 (25 bp)
ATCGAACTCCTGCAGCTACATAATT
LOC_Os03g49880
Os.13012.1.S1_at--1022--351Chr03:28379419..28379443 (25 bp)
ATAATTATCCTTTGCTTCTCAAGAG
LOC_Os03g49880
Os.13012.1.S1_at--137--5591Chr03:28379466..28379490 (25 bp)
TAATCCGGGTGTGTATTAATTCCCT
LOC_Os03g49880
Os.13012.1.S1_at--325--10391Chr03:28379501..28379525 (25 bp)
TTTTCTCGCGTTTATCCGGAGTTGA
LOC_Os03g49880
Os.13012.1.S1_at--549--2531Chr03:28379540..28379564 (25 bp)
AACTTTGGTTTGGTCATCGCATGGT
LOC_Os03g49880
Os.13012.1.S1_at--1128--291Chr03:28379578..28379602 (25 bp)
ATAGCTAGCACTATCGTCTGATCGA
LOC_Os03g49880
Target Sequence 
GTCCACCAATCTTGTGAGCACCGAATTGGAGGACGGCTCCTCGTCAACGCGCCACAACGGCGTCGGCGTCAGCGGCGGCC
GGATGCAAGAAATCTCGGCGGCTAGCGAGGCGAGCGACGTGATCATGGCGTTCGCCAACGGCGGCGCGTACGGCGACAGC
GGCAGCTACTACCTGCAGCAGCAGCATCAGCAGGATCAGTGGGAGCTCGGCGGCGTCGTCTACGCCAATTCGCGGCACTA
CTGCTGATGTGATCATCCATCCACACACGAACGAACGAACGAACGGTACGGCACTAAGATCGAACTCCTGCAGCTACATA
ATTATCCTTTGCTTCTCAAGAGTAATAATTCTTGACGTGTTAATTAATCCGGGTGTGTATTAATTCCCTCTTTATTATTT
TTTCTCGCGTTTATCCGGAGTTGACTGTGGTGAAGACNAACTTTGGTTTGGTCATCGCATGGTGTGCATTGCATATATAG
CTAGCACTATCGTCTGATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis