Browse Element(s) Details


OsAffx.25652.1.S1_at

Description tigr:9631.m04865
TID=OsAffx.25652.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4986011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49830OsAffx.25650.1.S1_at11/113+28339651..28340925expressed protein
LOC_Os03g49830OsAffx.25650.1.S1_x_at11/113+28339651..28340925expressed protein
LOC_Os03g49840OsAffx.25651.1.S1_at11/113+28348659..28349401hypothetical protein
LOC_Os03g49850OsAffx.13427.1.S1_at11/113+28356958..28357317hypothetical protein
LOC_Os03g49860OsAffx.25652.1.S1_at11/113+28358944..28361845hypothetical protein
LOC_Os03g49870NANA3+28363720..28366967transposon protein, putative, Mariner sub-class
LOC_Os03g49880Os.13012.1.S1_at11/113+28377677..28379633TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25652.1.S1_at--533--4611Chr03:28360446..28360470 (25 bp)
GCGACCACATGACCCTATTTGAGAA
LOC_Os03g49860
OsAffx.25652.1.S1_at--845--931Chr03:28360560..28360584 (25 bp)
AGGCAAGCGACGATGATGTTAGCAT
LOC_Os03g49860
OsAffx.25652.1.S1_at--636--5451Chr03:28360634..28360658 (25 bp)
GAACTCGTGCAAGACCAAGGCGCAT
LOC_Os03g49860
OsAffx.25652.1.S1_at--606--2411Chr03:28360662..28360870 (25 bp)
AAAAATTGCACACTAAGCCCACCAA
LOC_Os03g49860
OsAffx.25652.1.S1_at--997--4611Chr03:28360895..28360919 (25 bp)
GCGGATCCCGAAAGGTATCACCGAA
LOC_Os03g49860
OsAffx.25652.1.S1_at--410--9211Chr03:28360931..28360955 (25 bp)
TCCAATCTCTCATGGCGCGGTGGGT
LOC_Os03g49860
OsAffx.25652.1.S1_at--474--1651Chr03:28360959..28360983 (25 bp)
AGCCGACTTGCAGAATCACCATTGT
LOC_Os03g49860
OsAffx.25652.1.S1_at--1104--3571Chr03:28360978..28361002 (25 bp)
CATTGTCGACCTTCGGGAATGGCAT
LOC_Os03g49860
OsAffx.25652.1.S1_at--566--1211Chr03:28361033..28361057 (25 bp)
AGTTAGGGCGCTAGGCACATCGTCA
LOC_Os03g49860
OsAffx.25652.1.S1_at--352--7631Chr03:28361109..28361133 (25 bp)
GGGACATCCAGTCTAGCTGGAACGA
LOC_Os03g49860
OsAffx.25652.1.S1_at--902--8491Chr03:28361126..28361150 (25 bp)
TGGAACGACGACAGCTGTGCGACAA
LOC_Os03g49860
Target Sequence 
GCGACCACATGACCCTATTTGAGAAGAAGGCAAGCGTTGGGCAAATCGGCATCGAGGAGATGAGGGGAAAAGCTAAGGAT
GTGAGCAGTGAGGAGGGGAGTAGCGAGGAGATGGAGGCAAGCGACGATGATGTTAGCATGGTCATTGGGGGAGATGCGCA
AGATCCATACGATGATAGCGGCATAGAAGAACTCGTGCAAGACCAAGGCGCATTGGAAAAATTGCACACTAAGCCCACCA
AACTGGCCAACCCTAACTCCCTACTGCGGATCCCGAAAGGTATCACCGAATCCCCATCCCCTCCAATCTCTCATGGCGCG
GTGGGTGCAAGCCGACTTGCAGAATCACCATTGTCGACCTTCGGGAATGGCATGGTCTTCAGGCATGGTGAGGTGGGATG
CGCAGTTAGGGCGCTAGGCACATCGTCATGGGAGGAGTTGGCAGGGTGCAGCGACGGGCGAGCGGCGACGCACAGATGGG
GGACATCCAGTCTAGCTGGAACGACGACAGCTGTGCGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis