Browse Element(s) Details


OsAffx.25650.1.S1_at

Description tigr:9631.m04862
TID=OsAffx.25650.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4983011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49820OsAffx.3558.1.S1_at7/113+28321020..28324333hypothetical protein
LOC_Os03g49830OsAffx.25650.1.S1_at11/113+28339651..28340925expressed protein
LOC_Os03g49830OsAffx.25650.1.S1_x_at11/113+28339651..28340925expressed protein
LOC_Os03g49840OsAffx.25651.1.S1_at11/113+28348659..28349401hypothetical protein
LOC_Os03g49850OsAffx.13427.1.S1_at11/113+28356958..28357317hypothetical protein
LOC_Os03g49860OsAffx.25652.1.S1_at11/113+28358944..28361845hypothetical protein
LOC_Os03g49870NANA3+28363720..28366967transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25650.1.S1_at--463--7531Chr03:28340326..28340350 (25 bp)
GTGGCCACCGAGAAGGCGCCCTACT
LOC_Os03g49830
OsAffx.25650.1.S1_at--432--8451Chr03:28340327..28340351 (25 bp)
TGGCCACCGAGAAGGCGCCCTACTT
LOC_Os03g49830
OsAffx.25650.1.S1_at--869--8531Chr03:28340360..28340384 (25 bp)
TGGACGCCAAGCTCGATCAGGACGA
LOC_Os03g49830
OsAffx.25650.1.S1_at--1066--1811Chr03:28340363..28340387 (25 bp)
ACGCCAAGCTCGATCAGGACGAGGA
LOC_Os03g49830
OsAffx.25650.1.S1_at--901--4371Chr03:28340366..28340390 (25 bp)
CCAAGCTCGATCAGGACGAGGAGGT
LOC_Os03g49830
OsAffx.25650.1.S1_at--933--8931Chr03:28340579..28340603 (25 bp)
TGCAGCCCCGGTGCAACGCCGACGC
LOC_Os03g49830
OsAffx.25650.1.S1_at--44--4231Chr03:28340820..28340844 (25 bp)
CCGCTGCCGCGACAAGCAGGAGCTT
LOC_Os03g49830
OsAffx.25650.1.S1_at--136--4531Chr03:28340825..28340849 (25 bp)
GCCGCGACAAGCAGGAGCTTCTCCA
LOC_Os03g49830
OsAffx.25650.1.S1_at--808--971Chr03:28340837..28340861 (25 bp)
AGGAGCTTCTCCAGAGCGTGCGCCA
LOC_Os03g49830
OsAffx.25650.1.S1_at--948--5911Chr03:28340839..28340863 (25 bp)
GAGCTTCTCCAGAGCGTGCGCCAGT
LOC_Os03g49830
OsAffx.25650.1.S1_at--816--1551Chr03:28340840..28340864 (25 bp)
AGCTTCTCCAGAGCGTGCGCCAGTG
LOC_Os03g49830
Target Sequence 
GTGGCCACCGAGAAGGCGCCCTACTTCCCGGTCGTGGACGCCAAGCTCGATCAGGACGAGGAGGTCGCCGCCGAAGTCGA
GGAGGACGACGAGGTCGAGGAGGAGGAGGAGGAGGTGGAGGTGGTCGACAGGGGCACCGTGGTCGAGGTCAAGGTGAGCA
CGCAGCCGCAGACGCCCACCGCGGCCAAGGTGCACCGCTCGACGCTCGTCATCAACAAGTTCGTCGGCAGCACGCCGCTG
ACCGTCGCCGACCTGCAGCCCCGGTGCAACGCCGACGCGGCATGCGCAGCCGCCGCCGCCGCCGAAGCGACGACAGACGC
GCCGGCCCCGGCGCTTCGCCGCGTGCCGTCCTCCACCTCCACCACGACGCTGGCGGCCGCGGTCGCCGTGGCGTCGACCT
CCACCGACGGCGACGACGACGACGACGAGCCGCACCACCCGCCCGGCGCCGCCGCCCCCGCCGCCGACACCAAGCAGCTC
CTCCTCTTCACCTCCCGCTGCCGCGACAAGCAGGAGCTTCTCCAGAGCGTGCGCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis