Browse Element(s) Details


Os.13466.1.S1_at

Description gb:AK111742.1
DB_XREF= gi:37988405
TID=Os.13466.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050K14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050K14, full insert sequence.
FL= gb:AK111742.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4330011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43280Os.10493.1.S1_at11/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.52279.1.S1_at10/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_s_at8/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43280Os.8382.1.S1_x_at5/112+26073928..26079693aldehyde dehydrogenase family protein, expressed
LOC_Os02g43290Os.18692.1.S1_at11/112+26084581..26086052Protein kinase domain containing protein, expressed
LOC_Os02g43300Os.13466.1.S1_at11/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.12779.1.A1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.2477.1.S1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43310OsAffx.29929.1.S1_at5/112+26106943..26107553hypothetical protein
LOC_Os02g43314Os.54896.1.S1_at11/112+26120238..26121290expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13466.1.S1_at--204--1371Chr02:26094001..26094025 (25 bp)
AGAGCAGCAACGACGTCGGCAACGT
LOC_Os02g43300
Os.13466.1.S1_at--92--9211Chr02:26093877..26093977 (25 bp)
TCCACAACGCCCCAGACAAGAAGGT
LOC_Os02g43300
Os.13466.1.S1_at--808--7511Chr02:26093854..26093878 (25 bp)
GTGGAAGGCTCCGAAGGCGAACCAA
LOC_Os02g43300
Os.13466.1.S1_at--1111--6671Chr02:26093732..26093756 (25 bp)
GTTCCAGAAGCCAACTGCGGGCGGC
LOC_Os02g43300
Os.13466.1.S1_at--1024--5611Chr02:26093675..26093699 (25 bp)
GACAACTGCGGCAGCGACGAGTTCA
LOC_Os02g43300
Os.13466.1.S1_at--1062--3631Chr02:26093630..26093654 (25 bp)
CTTCCTTGCGGTTCAGTAGGTGGCA
LOC_Os02g43300
Os.13466.1.S1_at--557--2751Chr02:26093582..26093606 (25 bp)
AAGAAAGCCAGGCAGGCATCACCGT
LOC_Os02g43300
Os.13466.1.S1_at--96--8291Chr02:26093568..26093592 (25 bp)
GGCATCACCGTCTTCTTTTTCAGTT
LOC_Os02g43300
Os.13466.1.S1_at--843--7091Chr02:26093536..26093560 (25 bp)
GTCACAATTGCCCTATTATACTTTT
LOC_Os02g43300
Os.13466.1.S1_at--505--8511Chr02:26093490..26093514 (25 bp)
TGGCAACATCCCGTATACCATTTGT
LOC_Os02g43300
Os.13466.1.S1_at--655--6531Chr02:26093464..26093488 (25 bp)
GATTTCTTTCTGTGGTAACTAGCAA
LOC_Os02g43300
Target Sequence 
AGAGCAGCAACGACGTCGGCAACGTGCAGCTGGCGGTGCCCCTCCTTGTCCACAACGCCCCAGACAAGAAGGTGGAAGGC
TCCGAAGGCGAACCAANTGTCACANGCAGCANCGGAGGAGACGGACAGCGACGAGATGNGTGGAGAATACACCGACGATG
GCGACGACGACGACAAAATNCAGTACAAAATAGAGTTCCAGAAGCCAACTGCGGGCGGCGGCGGCGACGGCAACGACGCA
CCCGTGCCGGCGACAACTGCGGCAGCGACGAGTTCAGCCCCAACCAGCAACACCAGCTTCCTTGCGGTTCAGTAGGTGGC
AGTGCGCGCAGAGTGAGGGGGCTAAAGAAAGCCAGGCAGGCATCACCGTCTTCTTTTTCAGTTCAAGAGGGTCACAATTG
CCCTATTATACTTTTTCAGTTGTTTTGCTGTGATGTTGGCAACATCCCGTATACCATTTGTTGATTTCTTTCTGTGGTAA
CTAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis