Browse Element(s) Details


Os.54896.1.S1_at

Description gb:AK107035.1
DB_XREF= gi:32992244
TID=Os.54896.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B08, full insert sequence.
FL= gb:AK107035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4331411/11expressed protein
LOC_Os12g228701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43300Os.13466.1.S1_at11/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.12779.1.A1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43300OsAffx.2477.1.S1_x_at1/112+26093367..26096718expressed protein
LOC_Os02g43310OsAffx.29929.1.S1_at5/112+26106943..26107553hypothetical protein
LOC_Os02g43314Os.54896.1.S1_at11/112+26120238..26121290expressed protein
LOC_Os02g43320OsAffx.14914.2.S1_x_at11/112+26129611..26129890hypothetical protein
LOC_Os02g43320OsAffx.14914.1.S1_x_at1/112+26129611..26129890hypothetical protein
LOC_Os02g43330Os.49245.1.S1_at11/112+26137450..26138780Homeobox domain containing protein, expressed
LOC_Os02g43340Os.27724.2.A1_a_at10/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43340OsAffx.26001.3.S1_x_at2/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54896.1.S1_at--885--1691Chr02:26120716..26120740 (25 bp)
AGCCACGGTGACGTCTGCAACAAGC
LOC_Os02g43314
Os.54896.1.S1_at--27--9391Chr02:26120762..26120786 (25 bp)
TCGATGACGGCATCCGACGATTGGG
LOC_Os02g43314
Os.54896.1.S1_at--1000--6072Chr02:26120842..26120866 (25 bp)
GAGTATCTTAACATTGCCGCCAGCG
LOC_Os02g43314
Os.54896.1.S1_at--1095--71Chr02:26120854..26120878 (25 bp)
ATTGCCGCCAGCGAAATCCTATTTT
LOC_Os02g43314
Os.54896.1.S1_at--190--571Chr02:26120869..26120893 (25 bp)
ATCCTATTTTCACTGGTGGTCGTCT
LOC_Os02g43314
Os.54896.1.S1_at--648--7494Chr12:12906744..12906875 (25 bp)
GTGGTCGTCTTAGCTTGGCCGCCAA
LOC_Os12g22870
Os.54896.1.S1_at--772--2991Chr02:26120913..26120937 (25 bp)
AATGATTTTCACTGGCACGCTGTAT
LOC_Os02g43314
Os.54896.1.S1_at--617--9172Chr02:26120962..26120986 (25 bp)
TGCCCGCCAGCACAAATGAATTATT
LOC_Os02g43314
Os.54896.1.S1_at--949--3311Chr02:26120989..26121013 (25 bp)
CACTTGCCTTTGGTTGTTGGCAGTA
LOC_Os02g43314
Os.54896.1.S1_at--258--1191Chr02:26121010..26121034 (25 bp)
AGTATAGCCGGCCTCCAGCGAAAAC
LOC_Os02g43314
Os.54896.1.S1_at--13--1431Chr02:26121188..26121212 (25 bp)
AGAAAAATTGCACTCCTGTTTAGGG
LOC_Os02g43314
Target Sequence 
AGCCACGGTGACGTCTGCAACAAGCTCCCTCCTTCGCCGACGCAGCTCGATGACGGCATCCGACGATTGGGGATTAGGGA
TTTTTTATTGGAATTTTTTTTGCTCGAAAAAAATGTTTTCGTTGGCGAGTATCTTAACATTGCCGCCAGCGAAATCCTAT
TTTCACTGGTGGTCGTCTTAGCTTGGCCGCCAACGAAAATGATTTTCACTGGCACGCTGTATTAGCGTGGCCGCTAGCGA
GCCGACTGCCCGCCAGCACAAATGAATTATTTTCACTTGCCTTTGGTTGTTGGCAGTATAGCCGGCCTCCAGCGAAAACC
CATTTTGGCTGCCAGTAAAAACGGTTTTTTTAAGTAGTGATGAGAAACCAAATTTTTAAATTTTAGTATCCGTGGAGCCA
AATTATATAATAAAAAAATACAAATTCTCTTGGTAACTTCACAAGGTGTAAAATATTTTTTCTTTAAATTTCAGAAAAAT
TGCACTCCTGTTTAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis