Browse Element(s) Details


OsAffx.14914.2.S1_x_at

Description tigr:9630.m04166
TID=OsAffx.14914.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4332011/11hypothetical protein
LOC_Os05g323103/11U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g445501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43310OsAffx.29929.1.S1_at5/112+26106943..26107553hypothetical protein
LOC_Os02g43314Os.54896.1.S1_at11/112+26120238..26121290expressed protein
LOC_Os02g43320OsAffx.14914.2.S1_x_at11/112+26129611..26129890hypothetical protein
LOC_Os02g43320OsAffx.14914.1.S1_x_at1/112+26129611..26129890hypothetical protein
LOC_Os02g43330Os.49245.1.S1_at11/112+26137450..26138780Homeobox domain containing protein, expressed
LOC_Os02g43340Os.27724.2.A1_a_at10/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43340OsAffx.26001.3.S1_x_at2/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43350Os.26686.1.S1_a_at11/112+26150407..26156564ATP-dependent metalloprotease FtsH family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14914.2.S1_x_at--453--4172Chr05:25830091..25830424 (25 bp)
CGCCTTCTGTTTCTTGGCGCCGGCG
LOC_Os05g44550
OsAffx.14914.2.S1_x_at--283--8831Chr02:26129705..26129729 (25 bp)
TGATGTTGGGGTACTACTACGGCTC
LOC_Os02g43320
OsAffx.14914.2.S1_x_at--704--4472Chr05:18758263..18758287 (25 bp)
GCCGGAGCTAGTCGTCGTCGGCTCA
LOC_Os05g32310
OsAffx.14914.2.S1_x_at--782--9392Chr05:18758249..18758273 (25 bp)
TCGTCGGCTCAGGTTGCTCGAGGCT
LOC_Os05g32310
OsAffx.14914.2.S1_x_at--686--9452Chr05:18758246..18758270 (25 bp)
TCGGCTCAGGTTGCTCGAGGCTCGT
LOC_Os05g32310
OsAffx.14914.2.S1_x_at--699--911Chr02:26129646..26129670 (25 bp)
AGGCTCGTGGAGACGAACCCGTTCA
LOC_Os02g43320
OsAffx.14914.2.S1_x_at--480--8311Chr02:26129645..26129669 (25 bp)
GGCTCGTGGAGACGAACCCGTTCAT
LOC_Os02g43320
OsAffx.14914.2.S1_x_at--426--4811Chr02:26129644..26129668 (25 bp)
GCTCGTGGAGACGAACCCGTTCATT
LOC_Os02g43320
OsAffx.14914.2.S1_x_at--20--3791Chr02:26129643..26129667 (25 bp)
CTCGTGGAGACGAACCCGTTCATTG
LOC_Os02g43320
OsAffx.14914.2.S1_x_at--632--9391Chr02:26129642..26129666 (25 bp)
TCGTGGAGACGAACCCGTTCATTGT
LOC_Os02g43320
OsAffx.14914.2.S1_x_at--542--3991Chr02:26129641..26129665 (25 bp)
CGTGGAGACGAACCCGTTCATTGTG
LOC_Os02g43320
Target Sequence 
CGCCTTCTGTTTCTTGGCGCCGGCGGCGTTGATGTTGGGGTACTACTACGGCTCGCCGGAGCTAGTCGTCGTCGGCTCAG
GTTGCTCGAGGCTCGTGGAGACGAACCCGTTCATTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14914.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis