Browse Element(s) Details


Os.49245.1.S1_at

Description gb:AK063685.1
DB_XREF= gi:32973703
TID=Os.49245.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F01, full insert sequence.
FL= gb:AK063685.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4333011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43314Os.54896.1.S1_at11/112+26120238..26121290expressed protein
LOC_Os02g43320OsAffx.14914.2.S1_x_at11/112+26129611..26129890hypothetical protein
LOC_Os02g43320OsAffx.14914.1.S1_x_at1/112+26129611..26129890hypothetical protein
LOC_Os02g43330Os.49245.1.S1_at11/112+26137450..26138780Homeobox domain containing protein, expressed
LOC_Os02g43340Os.27724.2.A1_a_at10/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43340OsAffx.26001.3.S1_x_at2/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43350Os.26686.1.S1_a_at11/112+26150407..26156564ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os02g43360Os.5542.1.S1_at11/112+26157254..26158352Cytochrome b5, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006970biological_processresponse to osmotic stress
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49245.1.S1_at--972--951Chr02:26138221..26138245 (25 bp)
AGGACTACGTGAGCTGCCTCGCGGT
LOC_Os02g43330
Os.49245.1.S1_at--201--6991Chr02:26138297..26138321 (25 bp)
GTACGAGTACGACCATCACCTAGAC
LOC_Os02g43330
Os.49245.1.S1_at--501--391Chr02:26138311..26138335 (25 bp)
ATCACCTAGACTACTTGGGCGGCGG
LOC_Os02g43330
Os.49245.1.S1_at--985--3071Chr02:26138422..26138446 (25 bp)
AATCAATCAGCGTAGCATACAGTAT
LOC_Os02g43330
Os.49245.1.S1_at--482--6091Chr02:26138465..26138489 (25 bp)
GAGTACGTGTTGTATTGGGTCTATA
LOC_Os02g43330
Os.49245.1.S1_at--987--3611Chr02:26138520..26138544 (25 bp)
CTTGTGCAGTCAGTTGGTCCGGAGA
LOC_Os02g43330
Os.49245.1.S1_at--691--1351Chr02:26138542..26138566 (25 bp)
AGAGATCGACTAGAGCCGCGGCGCT
LOC_Os02g43330
Os.49245.1.S1_at--1003--8411Chr02:26138615..26138639 (25 bp)
GGCCGGCAAACCATGCAACAATGCA
LOC_Os02g43330
Os.49245.1.S1_at--345--3291Chr02:26138638..26138662 (25 bp)
CAAATCCACACATGCATTGCGTTGC
LOC_Os02g43330
Os.49245.1.S1_at--295--11Chr02:26138665..26138689 (25 bp)
AGATAGAAATCCTCCGGCCGGTCGA
LOC_Os02g43330
Os.49245.1.S1_at--187--6391Chr02:26138688..26138712 (25 bp)
GATCGCCGAGTCTTGCTGCTTGTTA
LOC_Os02g43330
Target Sequence 
AGGACTACGTGAGCTGCCTCGCGGTGCCGGTGGTGGACGTCTCGGAGGACGGCTCGGCGGCGTGCGGCGGGTCGTCGTAC
GAGTACGACCATCACCTAGACTACTTGGGCGGCGGCCAGCTGCCCGATCCGTTCTGCGGCATGCCGGATCTGTGGGAGAT
ATGGCCAATGGTGGAATGGAACGCAGTAGCATGATCATGCTAATCAATCAGCGTAGCATACAGTATATAAATATATATGT
GTATGAGTACGTGTTGTATTGGGTCTATATAGATATTTTGCTGCTGTTGCTGCTGCTGGCTTGTGCAGTCAGTTGGTCCG
GAGAGATCGACTAGAGCCGCGGCGCTCGTAAGCTAGACGGGAGAGCAGATTAGAGATGGANGATGCAACCGGCCGGCCGG
CAAACCATGCAACAATGCAAATCCACACATGCATTGCGTTGCACAGATAGAAATCCTCCGGCCGGTCGATCGCCGAGTCT
TGCTGCTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis