Browse Element(s) Details


Os.5542.1.S1_at

Description gb:AK066861.1
DB_XREF= gi:32976879
TID=Os.5542.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.5542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013079M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013079M22, full insert sequence.
FL= gb:AK066861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4336011/11Cytochrome b5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43330Os.49245.1.S1_at11/112+26137450..26138780Homeobox domain containing protein, expressed
LOC_Os02g43340Os.27724.2.A1_a_at10/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43340OsAffx.26001.3.S1_x_at2/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43350Os.26686.1.S1_a_at11/112+26150407..26156564ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os02g43360Os.5542.1.S1_at11/112+26157254..26158352Cytochrome b5, putative, expressed
LOC_Os02g43370OsAffx.2947.1.S1_at11/112+26165748..26169049transposon protein, putative, unclassified, expressed
LOC_Os02g43380NANA2+26170530..26170868hypothetical protein
LOC_Os02g43390OsAffx.22848.3.S1_x_at3/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_at2/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.11409.1.S1_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_x_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0005489molecular_functionelectron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5542.1.S1_at--817--5291Chr02:26158081..26158105 (25 bp)
GAAGGCGGTGTACTCGTTCCAGGAG
LOC_Os02g43360
Os.5542.1.S1_at--646--2891Chr02:26157855..26157878 (24 bp)
AAGGTGTACGACGTGTCGCCGTTCA
LOC_Os02g43360
Os.5542.1.S1_at--1158--5291Chr02:26157620..26157644 (25 bp)
GAAGGAGCTGATGCCGCAGTACTGC
LOC_Os02g43360
Os.5542.1.S1_at--1062--4111Chr02:26157606..26157630 (25 bp)
CGCAGTACTGCATCGGCGAGGTCGA
LOC_Os02g43360
Os.5542.1.S1_at--87--5691Chr02:26157433..26157457 (25 bp)
GACTTCGCCAAGACCAAGACGGCGT
LOC_Os02g43360
Os.5542.1.S1_at--1019--7551Chr02:26157376..26157400 (25 bp)
GGGCCTCTTGGAATCGTCATCTGAA
LOC_Os02g43360
Os.5542.1.S1_at--305--9411Chr02:26157363..26157387 (25 bp)
TCGTCATCTGAATATTTGGGTCCAT
LOC_Os02g43360
Os.5542.1.S1_at--289--10851Chr02:26157348..26157372 (25 bp)
TTGGGTCCATAGGTCGAAGTGTCAG
LOC_Os02g43360
Os.5542.1.S1_at--576--7791Chr02:26157337..26157361 (25 bp)
GGTCGAAGTGTCAGACTGTCAATTA
LOC_Os02g43360
Os.5542.1.S1_at--1040--111Chr02:26157316..26157340 (25 bp)
ATTAAGTGTACCAGTGCTAAGTGCT
LOC_Os02g43360
Os.5542.1.S1_at--403--3452Chr03:27098638..27099139 (25 bp)
CAGTGCTAAGTGCTAGTTAATTATT
NONE
Target Sequence 
GAAGGCGGTGTACTCGTTCCAGGAGNNGANCAAGCANCAACGNCCGGAAGGATTGCTGGCTCATCATCGCCGGCAAGGTG
TACGACGTGTCGCCGTTCATNGGAGGAGCACCCCGGCGGCGACGAGGTCCTGCNTGGCNGTGCACCGNGCAAGGACGCNG
ANCCGCGGATTTCAACNGACATCGGGCACACGGCGACGGCGAAGGAGCTGATGCCGCAGTACTGCATCGGCGAGGTCGAC
GCCTCCACGGTCCCGGCCAAGCCGGCCTACCGCGTCGTCTCCGAGGACGCGAGCGCCAAGCCGGACGCCGCGAGCCAGGG
CGCCTGGCTCACGGCGCTGCAGCTCGCCGTGCCGGTTGTGCTGCTGGGGCTGGCCTACGCGCTCCAGGACTTCGCCAAGA
CCAAGACGGCGTAGGGCTAGGGCGGCTCTGCCGCNGCAGGCTGGGGGCCTCTTGGAATCGTCATCTGAATATTTGGGTCC
ATAGGTCGAAGTGTCAGACTGTCAATTAAGTGTACCAGTGCTAAGTGCTAGTTAATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis