Browse Element(s) Details


OsAffx.2947.1.S1_at

Description tigr:9630.m04172
TID=OsAffx.2947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F11A17.8
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4337011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43340Os.27724.2.A1_a_at10/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43340OsAffx.26001.3.S1_x_at2/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43350Os.26686.1.S1_a_at11/112+26150407..26156564ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os02g43360Os.5542.1.S1_at11/112+26157254..26158352Cytochrome b5, putative, expressed
LOC_Os02g43370OsAffx.2947.1.S1_at11/112+26165748..26169049transposon protein, putative, unclassified, expressed
LOC_Os02g43380NANA2+26170530..26170868hypothetical protein
LOC_Os02g43390OsAffx.22848.3.S1_x_at3/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_at2/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.11409.1.S1_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_x_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43400OsAffx.14491.1.S1_at1/112+26186104..26189068retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2947.1.S1_at--84--7171Chr02:26166302..26166326 (25 bp)
GTCTCTGCTGATTTGATGCACGACT
LOC_Os02g43370
OsAffx.2947.1.S1_at--724--1971Chr02:26166189..26166213 (25 bp)
ACTGACTTTCTTGCTCTTCTACAAA
LOC_Os02g43370
OsAffx.2947.1.S1_at--1022--5291Chr02:26166132..26166156 (25 bp)
GAAGGCTCCATATGCCCTGATATTT
LOC_Os02g43370
OsAffx.2947.1.S1_at--473--5531Chr02:26166106..26166130 (25 bp)
GAAACATGGCCATTCTTGGCGTCGA
LOC_Os02g43370
OsAffx.2947.1.S1_at--789--9371Chr02:26166085..26166109 (25 bp)
TCGAGGGCTTTTCTGCACTACCAAA
LOC_Os02g43370
OsAffx.2947.1.S1_at--295--3591Chr02:26166028..26166052 (25 bp)
CATTTTCTGTGCTCATCAACCTTAT
LOC_Os02g43370
OsAffx.2947.1.S1_at--931--2631Chr02:26166011..26166035 (25 bp)
AACCTTATGAGGGACTTCTTGCCAC
LOC_Os02g43370
OsAffx.2947.1.S1_at--740--7271Chr02:26165945..26165969 (25 bp)
GTGCCATTCCTTGTTGGTGCAAATT
LOC_Os02g43370
OsAffx.2947.1.S1_at--916--5411Chr02:26165899..26165923 (25 bp)
GAAGCCTGATAGTCTTTGCCTGGCA
LOC_Os02g43370
OsAffx.2947.1.S1_at--545--3211Chr02:26165862..26165886 (25 bp)
CAAGGAGTCTGCGTTGCTAGTGCCA
LOC_Os02g43370
OsAffx.2947.1.S1_at--56--8591Chr02:26165808..26165832 (25 bp)
TGGTATATGGATGTTCCCTTCTTCC
LOC_Os02g43370
Target Sequence 
GTCTCTGCTGATTTGATGCACGACTTTAAGACTGGTCATCTGACATTAACATCACCAAGATCCATGCTTGTTGGGCAGGC
CATTGGTACAGCCATGGGCTGCATAATCGCTCCACTGACTTTCTTGCTCTTCTACAAAGCATTTGATATTGGGAACCCTG
ATGGATACTGGAAGGCTCCATATGCCCTGATATTTCGAAACATGGCCATTCTTGGCGTCGAGGGCTTTTCTGCACTACCA
AAGCATTGTCTTGAGCTGTCTGCTGGCTTCTTTGCATTTTCTGTGCTCATCAACCTTATGAGGGACTTCTTGCCACGCAA
GTACAGGGATTATGTGCCCCTGCCGACGGCAATGGCTGTGCCATTCCTTGTTGGTGCAAATTTTGCTATTGACATGTGTG
TGGGAAGCCTGATAGTCTTTGCCTGGCACAAGATCAACAGCAAGGAGTCTGCGTTGCTAGTGCCAGCGGTTGCGTCTGGT
TTTATTTGTGGAGATGGTATATGGATGTTCCCTTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis