Browse Element(s) Details


Os.26686.1.S1_a_at

Description gb:AK069509.1
DB_XREF= gi:32979533
TID=Os.26686.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.26686 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020K03, full insert sequence.
FL= gb:AK069509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4335011/11ATP-dependent metalloprotease FtsH family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43320OsAffx.14914.2.S1_x_at11/112+26129611..26129890hypothetical protein
LOC_Os02g43320OsAffx.14914.1.S1_x_at1/112+26129611..26129890hypothetical protein
LOC_Os02g43330Os.49245.1.S1_at11/112+26137450..26138780Homeobox domain containing protein, expressed
LOC_Os02g43340Os.27724.2.A1_a_at10/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43340OsAffx.26001.3.S1_x_at2/112+26140729..26145469Embryogenesis-associated protein EMB8, putative, expressed
LOC_Os02g43350Os.26686.1.S1_a_at11/112+26150407..26156564ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os02g43360Os.5542.1.S1_at11/112+26157254..26158352Cytochrome b5, putative, expressed
LOC_Os02g43370OsAffx.2947.1.S1_at11/112+26165748..26169049transposon protein, putative, unclassified, expressed
LOC_Os02g43380NANA2+26170530..26170868hypothetical protein
LOC_Os02g43390OsAffx.22848.3.S1_x_at3/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_at2/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.11409.1.S1_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43390OsAffx.22848.4.S1_x_at1/112+26172135..26181051retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0010206biological_processphotosystem II repair
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0004176molecular_functionATP-dependent peptidase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26686.1.S1_a_at--421--1231Chr02:26156239..26156263 (25 bp)
AGTTCTGAGGTACGCAACTCACGCC
LOC_Os02g43350
Os.26686.1.S1_a_at--748--1811Chr02:26156259..26156283 (25 bp)
ACGCCCAAGCCAAGACCCTTGTGAT
LOC_Os02g43350
Os.26686.1.S1_a_at--519--8771Chr02:26156286..26156310 (25 bp)
TGTATATATCTATGTGCCGCTCCAC
LOC_Os02g43350
Os.26686.1.S1_a_at--723--1771Chr02:26156312..26156336 (25 bp)
ACCCTTGACTACAGGTCTACCAGGA
LOC_Os02g43350
Os.26686.1.S1_a_at--417--2131Chr02:26156322..26156346 (25 bp)
ACAGGTCTACCAGGAATGATTCATA
LOC_Os02g43350
Os.26686.1.S1_a_at--466--9971Chr02:26156345..26156369 (25 bp)
TAGCGAGTTGTAAACCCCGGAGTAT
LOC_Os02g43350
Os.26686.1.S1_a_at--1024--3751Chr02:26156389..26156413 (25 bp)
CTCGTTTGCCGTTGGATGTTGTTTA
LOC_Os02g43350
Os.26686.1.S1_a_at--393--3111Chr02:26156444..26156468 (25 bp)
AATATTCGTTTTTCTTCTGTGTTCT
LOC_Os02g43350
Os.26686.1.S1_a_at--896--3671Chr02:26156473..26156497 (25 bp)
CTTTCTGTTCATCCTGCGGAAGGAA
LOC_Os02g43350
Os.26686.1.S1_a_at--414--3811Chr02:26156486..26156510 (25 bp)
CTGCGGAAGGAATTTTTTGTTACAT
LOC_Os02g43350
Os.26686.1.S1_a_at--595--10791Chr02:26156502..26156526 (25 bp)
TTGTTACATTGTCATCTTGGCAAAT
LOC_Os02g43350
Target Sequence 
AGTTCTGAGGTACGCAACTCACGCCCAAGCCAAGACCCTTGTGATGCTGTATATATCTATGTGCCGCTCCACGACCCTTG
ACTACAGGTCTACCAGGAATGATTCATAGCGAGTTGTAAACCCCGGAGTATTGTAAGTTCCTTCGGTTTCCTCGTTTGCC
GTTGGATGTTGTTTATAGATTAGGCGGGTGGTACACATGTNAAAGAATATTCGTTTTTCTTCTGTGTTCTTTCTCTTTCT
GTTCATCCTGCGGAAGGAATTTTTTGTTACATTGTCATCTTGGCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26686.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis