Browse Element(s) Details


OsAffx.14914.1.S1_x_at

Description tigr:9633.m02957
TID=OsAffx.14914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY034896 Sm-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g323108/11U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g445502/11hypothetical protein
LOC_Os02g433201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32270Os.49193.1.S1_at11/115+18730328..18734550AP2 domain transcription factor, putative, expressed
LOC_Os05g32280OsAffx.828.1.S1_x_at1/115+18736757..18737946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32290OsAffx.9949.1.S1_at1/115+18739991..18745654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32300OsAffx.30227.2.S1_at11/115+18747126..18747926hypothetical protein
LOC_Os05g32310OsAffx.14914.1.S1_x_at8/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310Os.26574.1.S1_at4/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310OsAffx.14914.2.S1_x_at3/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32320Os.16089.1.A1_at11/115+18759608..18762691folate/biopterin transporter family protein, expressed
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14914.1.S1_x_at--481--4431Chr05:18758316..18758440 (25 bp)
GCCTTCTGTTTTTTGGCGCCGGCGG
LOC_Os05g32310
OsAffx.14914.1.S1_x_at--662--9092Chr05:18758235..18758259 (25 bp)
TGCTCGAGGCTCGTGGAGACGAACT
LOC_Os05g32310
OsAffx.14914.1.S1_x_at--678--1851Chr05:18758217..18758241 (25 bp)
ACGAACTCGTTCATTGTGCAGGACA
LOC_Os05g32310
OsAffx.14914.1.S1_x_at--149--5011Chr05:18758124..18758224 (25 bp)
GCAGGACATCAAGGCGAGGACGGAT
LOC_Os05g32310
OsAffx.14914.1.S1_x_at--39--5751Chr05:18758106..18758130 (25 bp)
GACGGATGGAGGGTCGCCGGAGAAT
LOC_Os05g32310
OsAffx.14914.1.S1_x_at--465--4492Chr05:25830623..25830647 (25 bp)
GCCGGAGAATGGGTTGGTGCTCTAC
LOC_Os05g44550
OsAffx.14914.1.S1_x_at--1139--7771Chr05:25830638..25831044 (25 bp)
GGTGCTCTACGGGATGCCGTTCTTG
LOC_Os05g44550
OsAffx.14914.1.S1_x_at--820--9911NONE
TACGGGATGCCGTTCTTGCGGGCTT
NONE
OsAffx.14914.1.S1_x_at--956--4231NONE
CCGTTCTTGCGGGCTTTGGTTTGTG
NONE
OsAffx.14914.1.S1_x_at--1107--3411Chr05:18757299..18757323 (25 bp)
CAGAGCTGATTGACCGCTGCATCGG
LOC_Os05g32310
OsAffx.14914.1.S1_x_at--886--4131Chr05:18757285..18757309 (25 bp)
CGCTGCATCGGGTCCAAGATTTGGG
LOC_Os05g32310
Target Sequence 
GCCTTCTGTTTTTTGGCGCCGGCGGCGTTGATGTTGGGGTACTACCACGACTCGCCGGAGCTAGTCGTCGTCGGCTCAGG
TTGCTCGAGGCTCGTGGAGACGAACTCGTTCATTGTGCAGGACATCAAGGCGAGGACGGATGGAGGGTCGCCGGAGAATG
GGTTGGTGCTCTACGGGATGCCGTTCTTGCGGGCTTTGGTTTGTGCAGAGCTGATTGACCGCTGCATCGGGTCCAAGATT
TGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14914.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis