Browse Element(s) Details


Os.26574.1.S1_at

Description gb:AK059190.1
DB_XREF= gi:32969208
TID=Os.26574.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-023-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H03, full insert sequence.
FL= gb:AK059190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g323104/11U6 snRNA-associated Sm-like protein LSm5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32270Os.49193.1.S1_at11/115+18730328..18734550AP2 domain transcription factor, putative, expressed
LOC_Os05g32280OsAffx.828.1.S1_x_at1/115+18736757..18737946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32290OsAffx.9949.1.S1_at1/115+18739991..18745654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32300OsAffx.30227.2.S1_at11/115+18747126..18747926hypothetical protein
LOC_Os05g32310OsAffx.14914.1.S1_x_at8/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310Os.26574.1.S1_at4/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310OsAffx.14914.2.S1_x_at3/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32320Os.16089.1.A1_at11/115+18759608..18762691folate/biopterin transporter family protein, expressed
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26574.1.S1_at--346--9011Chr05:18755705..18755729 (25 bp)
TGAATACACTGCTGAAGGCCGTCGC
LOC_Os05g32310
Os.26574.1.S1_at--619--891Chr05:18755690..18755714 (25 bp)
AGGCCGTCGCATAACAAAGCTTGAT
LOC_Os05g32310
Os.26574.1.S1_at--355--4931Chr05:18755672..18755696 (25 bp)
GCTTGATCAGATACTCCTAAACGGC
LOC_Os05g32310
Os.26574.1.S1_at--970--1551Chr05:18755538..18755663 (25 bp)
AGCTATTTTGGTTCCTGGTGGTTCT
LOC_Os05g32310
Os.26574.1.S1_at--1072--8491Chr05:18755503..18755527 (25 bp)
TGGCATAAGCAAGCACTTCCGTGAT
NONE
Os.26574.1.S1_at--1078--5811Chr05:18755450..18755474 (25 bp)
GACCGGTGTTTCCTTACTTCAAATG
NONE
Os.26574.1.S1_at--247--10831Chr05:18755413..18755437 (25 bp)
TTGTGGCTGTACTGAACTTTCTTAG
NONE
Os.26574.1.S1_at--179--8931Chr05:18755383..18755407 (25 bp)
TGACCTGAAGTAGTGTACCTGCAAC
NONE
Os.26574.1.S1_at--134--9031Chr05:18755364..18755388 (25 bp)
TGCAACAGTTGCTCCTACATGATTT
NONE
Os.26574.1.S1_at--6--711Chr05:18755326..18755350 (25 bp)
ATGAGGTACCTCTTGTAGCTGTTTA
NONE
Os.26574.1.S1_at--662--10411Chr05:18755304..18755328 (25 bp)
TTATTACCATTCTTCTGCAACCTGA
NONE
Target Sequence 
TGAATACACTGCTGAAGGCCGTCGCATAACAAAGCTTGATCAGATACTCCTAAACGGCAACAATATAGCTATTTTGGTTC
CTGGTGGTTCTCCCCCAGATGTGGCATAAGCAAGCACTTCCGTGATATACCTGCTTGAGGCTGATGGAGGCACAGACCGG
TGTTTCCTTACTTCAAATGTATTTCTTCCATTTGTGGCTGTACTGAACTTTCTTAGTTAACTGACCTGAAGTAGTGTACC
TGCAACAGTTGCTCCTACATGATTTGGCAATGCTAAGTATGAGGTACCTCTTGTAGCTGTTTATTACCATTCTTCTGCAA
CCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis