Browse Element(s) Details


OsAffx.30227.2.S1_at

Description tigr:9633.m02956
TID=OsAffx.30227.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3230011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32250OsAffx.6425.1.S1_at1/115+18721123..18724096hypothetical protein
LOC_Os05g32260NANA5+18725711..18725992hypothetical protein
LOC_Os05g32270Os.49193.1.S1_at11/115+18730328..18734550AP2 domain transcription factor, putative, expressed
LOC_Os05g32280OsAffx.828.1.S1_x_at1/115+18736757..18737946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32290OsAffx.9949.1.S1_at1/115+18739991..18745654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32300OsAffx.30227.2.S1_at11/115+18747126..18747926hypothetical protein
LOC_Os05g32310OsAffx.14914.1.S1_x_at8/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310Os.26574.1.S1_at4/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310OsAffx.14914.2.S1_x_at3/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32320Os.16089.1.A1_at11/115+18759608..18762691folate/biopterin transporter family protein, expressed
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30227.2.S1_at--634--7151Chr05:18747486..18747510 (25 bp)
GTCTACTACGGCGACGTCACGAATG
LOC_Os05g32300
OsAffx.30227.2.S1_at--141--4611Chr05:18747496..18747520 (25 bp)
GCGACGTCACGAATGCCCAGGCCGA
LOC_Os05g32300
OsAffx.30227.2.S1_at--31--4411Chr05:18747565..18747589 (25 bp)
GCCACATCGCGGAGAGCTTCACCGA
LOC_Os05g32300
OsAffx.30227.2.S1_at--519--8371Chr05:18747670..18747694 (25 bp)
GGCGCTACGACTTCAGGTGCGGATA
LOC_Os05g32300
OsAffx.30227.2.S1_at--627--10511Chr05:18747681..18747705 (25 bp)
TTCAGGTGCGGATACAACGACGACG
LOC_Os05g32300
OsAffx.30227.2.S1_at--12--9991Chr05:18747747..18747771 (25 bp)
TACCAGCGCCTCATGGCGAACAATA
LOC_Os05g32300
OsAffx.30227.2.S1_at--828--4451Chr05:18747754..18747778 (25 bp)
GCCTCATGGCGAACAATAACGTGGT
LOC_Os05g32300
OsAffx.30227.2.S1_at--148--7711Chr05:18747805..18747829 (25 bp)
GGGTGTCCTTCCTGGTGTTCACGTT
LOC_Os05g32300
OsAffx.30227.2.S1_at--375--8611Chr05:18747817..18747841 (25 bp)
TGGTGTTCACGTTCCGATCGGCGGC
LOC_Os05g32300
OsAffx.30227.2.S1_at--1084--8391Chr05:18747839..18747863 (25 bp)
GGCGCTGCTGACCAAGCACAAATGG
LOC_Os05g32300
OsAffx.30227.2.S1_at--751--8091Chr05:18747869..18747893 (25 bp)
GGACCATGAGGCTAGCGGCGCATTA
LOC_Os05g32300
Target Sequence 
GTCTACTACGGCGACGTCACGAATGCCCAGGCCGACCTCTCGCTCGGCCGCCTCTCCCTCTCCGGCGGCGCCGCCGCCCG
CCACATCGCGGAGAGCTTCACCGACGACGAGCTGGACGGGGTGCTCGACGACGGCTACGACGGCGACGACGGGCTGGAGG
TGCCGGTGTTCGACGAGGAGGGGCGGCGCTACGACTTCAGGTGCGGATACAACGACGACGGGTTCACCGGCCAGTACCAG
CTCGTCGGCGCCGGCGGCGACTACCAGCGCCTCATGGCGAACAATAACGTGGTGCGCGACGTCGCCGAGCTAGGGAAAGG
GGTGTCCTTCCTGGTGTTCACGTTCCGATCGGCGGCGCTGCTGACCAAGCACAAATGGGAGGAGGACCATGAGGCTAGCG
GCGCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30227.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis