Browse Element(s) Details


OsAffx.6425.1.S1_at

Description tigr:9637.m02489
TID=OsAffx.6425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2819011/11hypothetical protein
LOC_Os05g248102/11hypothetical protein
LOC_Os05g322501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28160Os.23183.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28160OsAffx.17942.1.S1_at11/119+17081094..17082565Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os09g28170OsAffx.26553.2.S1_at2/119+17089942..17090322hypothetical protein
LOC_Os09g28180Os.18717.2.S1_at11/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28180OsAffx.27348.1.S1_x_at2/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28190OsAffx.6425.1.S1_at11/119+17105645..17106890hypothetical protein
LOC_Os09g28200OsAffx.17944.1.S1_at11/119+17108293..17110076HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28210Os.51063.1.S1_at11/119+17131210..17132474Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6425.1.S1_at--348--4151Chr09:17105912..17105936 (25 bp)
CGCCCAGGGAGAAGGTCGACCACGA
LOC_Os09g28190
OsAffx.6425.1.S1_at--916--891Chr09:17106080..17106104 (25 bp)
AGGCGCGGCGCCCAACGAGAAGTGC
LOC_Os09g28190
OsAffx.6425.1.S1_at--323--9074Chr10:5259791..5259814 (24 bp)
TGCTTCGTTGGGTGCGATGAAGCTC
NONE
OsAffx.6425.1.S1_at--235--9451Chr09:17106712..17106736 (25 bp)
TCGGCAACAATAACACATTGCAGTT
LOC_Os09g28190
OsAffx.6425.1.S1_at--1040--3311Chr09:17106725..17106749 (25 bp)
CACATTGCAGTTTTTGAGGAGTGTT
LOC_Os09g28190
OsAffx.6425.1.S1_at--1026--3772Chr09:17106777..17106801 (25 bp)
CTCTGGCGGCTTGGGCTGATGTTCA
LOC_Os09g28190
OsAffx.6425.1.S1_at--1064--4917Chr12:7568697..7568735 (24 bp)
GCTTGGGCTGATGTTCAAAGTGGAC
NONE
OsAffx.6425.1.S1_at--77--6294Chr10:5259897..5259919 (23 bp)
GATGTTCAAAGTGGACAATCGGTGT
NONE
OsAffx.6425.1.S1_at--650--7451Chr09:17106815..17106839 (25 bp)
GTGTCTTGCTCGTTTCTGCGATGTC
LOC_Os09g28190
OsAffx.6425.1.S1_at--1063--9391Chr09:17106824..17106848 (25 bp)
TCGTTTCTGCGATGTCTTTGGCAAT
LOC_Os09g28190
OsAffx.6425.1.S1_at--229--8731Chr09:17106836..17106860 (25 bp)
TGTCTTTGGCAATGATGATCTGATA
LOC_Os09g28190
Target Sequence 
CGCCCAGGGAGAAGGTCGACCACGACGGGAAGGCCGGCGGCGCGCGCGGAGGCGGTCGCCGGTGTTGTGGCAGCGACCAG
GCGACCGCGCCGCCGCCAACTTCTCCCCCTCCTCCCCTCCACCTCGCTGAAGCTCGGCCTCCTCTCGCAGGTGCGGTGGC
CTGGGAGGAGGCGCGGCGCCCAACGAGAAGTGCGGAGGTGGCCGACGTGGGTAGTAGGAAAGGAGGCCGGCGGTGAAGTC
GGAGCTGCTTCGTTGGGTGCGATGAAGCTCGGCAACAATAACACATTGCAGTTTTTGAGGAGTGTTGGTGTTAGCTGTGT
ACAAGAAGTGGTGCTCTGGCGGCTTGGGCTGATGTTCAAAGTGGACAATCGGTGTCTTGCTCGTTTCTGCGATGTCTTTG
GCAATGATGATCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis