Browse Element(s) Details


OsAffx.17944.1.S1_at

Description tigr:9637.m02490
TID=OsAffx.17944.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=HSF-type DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2820011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28170OsAffx.26553.2.S1_at2/119+17089942..17090322hypothetical protein
LOC_Os09g28180Os.18717.2.S1_at11/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28180OsAffx.27348.1.S1_x_at2/119+17090957..17094316D-mannose binding lectin family protein, expressed
LOC_Os09g28190OsAffx.6425.1.S1_at11/119+17105645..17106890hypothetical protein
LOC_Os09g28200OsAffx.17944.1.S1_at11/119+17108293..17110076HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28210Os.51063.1.S1_at11/119+17131210..17132474Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17944.1.S1_at--548--9271Chr09:17109056..17109080 (25 bp)
TCCTGCAGGGCCTCGGCATGCAGGC
LOC_Os09g28200
OsAffx.17944.1.S1_at--927--7551Chr09:17109049..17109073 (25 bp)
GGGCCTCGGCATGCAGGCGCGCAAG
LOC_Os09g28200
OsAffx.17944.1.S1_at--260--2591Chr09:17109009..17109033 (25 bp)
AACGTGCTCAACAACTCAGGCGGGA
LOC_Os09g28200
OsAffx.17944.1.S1_at--920--3731Chr09:17109003..17109027 (25 bp)
CTCAACAACTCAGGCGGGAGCACAA
LOC_Os09g28200
OsAffx.17944.1.S1_at--749--2531Chr09:17108997..17109021 (25 bp)
AACTCAGGCGGGAGCACAACGTCGA
LOC_Os09g28200
OsAffx.17944.1.S1_at--1108--1511Chr09:17108930..17108954 (25 bp)
AGCAGCAGCATCTAGCCGGCGAGAA
LOC_Os09g28200
OsAffx.17944.1.S1_at--190--2151Chr09:17108885..17108909 (25 bp)
ACAGCAGCGCCGCTCGGTCATCGGC
LOC_Os09g28200
OsAffx.17944.1.S1_at--772--3411Chr09:17108809..17108833 (25 bp)
CAGCAAGAGAGCGTCTTCGCCGGAG
LOC_Os09g28200
OsAffx.17944.1.S1_at--238--1691Chr09:17108756..17108780 (25 bp)
AGCCTCGCCTCGTGCTGGAGTGCGA
LOC_Os09g28200
OsAffx.17944.1.S1_at--784--8551Chr09:17108741..17108765 (25 bp)
TGGAGTGCGACGACCTAAGCCTGAC
LOC_Os09g28200
OsAffx.17944.1.S1_at--619--1131Chr09:17108738..17108762 (25 bp)
AGTGCGACGACCTAAGCCTGACCGT
LOC_Os09g28200
Target Sequence 
TCCTGCAGGGCCTCGGCATGCAGGCGCGCAAGAAGCCCGCCGCCGCCAACGTGCTCAACAACTCAGGCGGGAGCACAACG
TCGAGCAGCTCGCTCACCATCGCCGAGGAGCCTTCCCCTCCGCCGCAGCAGCAGCATCTAGCCGGCGAGAAGAGCGGCGG
GGAGGCAGGCAACAGCAGCGCCGCTCGGTCATCGGCGCCGACCAAGCTCTTCGGCGTGCACCTAAGCGCCGCCCCGTGCG
GCGCCGGCAGCAAGAGAGCGTCTTCGCCGGAGGAGCACCCGCCCACGTCGCCGGCCACGAAGCCTCGCCTCGTGCTGGAG
TGCGACGACCTAAGCCTGACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis