Browse Element(s) Details


Os.51063.1.S1_at

Description gb:AK070458.1
DB_XREF= gi:32980482
TID=Os.51063.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.51063 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048E05, full insert sequence.
FL= gb:AK070458.1 gb:AK060477.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2821011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28190OsAffx.6425.1.S1_at11/119+17105645..17106890hypothetical protein
LOC_Os09g28200OsAffx.17944.1.S1_at11/119+17108293..17110076HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g28210Os.51063.1.S1_at11/119+17131210..17132474Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g28220Os.19563.1.S1_at11/119+17140404..17142181expressed protein
LOC_Os09g28230Os.52216.1.S1_at11/119+17144775..171460572-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28240OsAffx.6426.1.S1_at11/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_x_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28250NANA9+17153074..17153601hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51063.1.S1_at--546--4851Chr09:17132104..17132128 (25 bp)
GCTACTAGCTCCCACATGGATAGAT
LOC_Os09g28210
Os.51063.1.S1_at--107--5971Chr09:17132135..17132159 (25 bp)
GAGACAATCGTTTCCCATTACTATC
LOC_Os09g28210
Os.51063.1.S1_at--83--151Chr09:17132151..17132175 (25 bp)
ATTACTATCGCGTCTCACATGCTTG
LOC_Os09g28210
Os.51063.1.S1_at--540--6391Chr09:17132193..17132217 (25 bp)
GATCGATCAATCACCACTGCTGCTG
LOC_Os09g28210
Os.51063.1.S1_at--386--5991Chr09:17132269..17132293 (25 bp)
GAGACTACCTGATTACTAGTACCAT
LOC_Os09g28210
Os.51063.1.S1_at--1057--151Chr09:17132296..17132320 (25 bp)
ATTATTGCTGTTGTACGTTACCGCA
LOC_Os09g28210
Os.51063.1.S1_at--1--6791Chr09:17132312..17132336 (25 bp)
GTTACCGCATGCTAGCTCGTACGTA
LOC_Os09g28210
Os.51063.1.S1_at--190--8331Chr09:17132340..17132364 (25 bp)
GGCTGCTCCGAGCTTTTGTTGGACT
LOC_Os09g28210
Os.51063.1.S1_at--884--9051Chr09:17132378..17132402 (25 bp)
TGCATGCGCGTTTCATTCGACCGTA
LOC_Os09g28210
Os.51063.1.S1_at--635--9351Chr09:17132394..17132418 (25 bp)
TCGACCGTAGGCTTGTACTGTACTG
LOC_Os09g28210
Os.51063.1.S1_at--1048--1951Chr09:17132415..17132439 (25 bp)
ACTGTACACATTTCCTTCTATTCTA
LOC_Os09g28210
Target Sequence 
GCTACTAGCTCCCACATGGATAGATGGTGATGAGACAATCGTTTCCCATTACTATCGCGTCTCACATGCTTGTCGCCGTC
GTCGTCGTCGATCGATCAATCACCACTGCTGCTGCTGCAGCATGCATGATCACATGCATGTGNAAATTAGTAGTACAAGA
TGTAGGAGACTACCTGATTACTAGTACCATTTATTATTGCTGTTGTACGTTACCGCATGCTAGCTCGTACGTACGTGGCT
GCTCCGAGCTTTTGTTGGACTCGCAGCCCGTACGTGCATGCGCGTTTCATTCGACCGTAGGCTTGTACTGTACTGTACAC
ATTTCCTTCTATTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51063.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis