Browse Element(s) Details


Os.52216.1.S1_at

Description gb:AK065686.1
DB_XREF= gi:32975704
TID=Os.52216.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013042H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013042H09, full insert sequence.
FL= gb:AK065686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2823011/112-Hydroxyisoflavanone dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28210Os.51063.1.S1_at11/119+17131210..17132474Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g28220Os.19563.1.S1_at11/119+17140404..17142181expressed protein
LOC_Os09g28230Os.52216.1.S1_at11/119+17144775..171460572-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28240OsAffx.6426.1.S1_at11/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_x_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28250NANA9+17153074..17153601hypothetical protein
LOC_Os09g28260NANA9+17157640..17163352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28270NANA9+17166042..17167607hypothetical protein
LOC_Os09g28280Os.37075.1.S1_at11/119+17170659..171718062-Hydroxyisoflavanone dehydratase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52216.1.S1_at--1150--2771Chr09:17145344..17145368 (25 bp)
AAGAGATGGGCGGTCATCTTCCCCG
LOC_Os09g28230
Os.52216.1.S1_at--157--6391Chr09:17145194..17145218 (25 bp)
GATCGGGCGTACTACGACGCAGTCA
LOC_Os09g28230
Os.52216.1.S1_at--125--9951Chr09:17145182..17145206 (25 bp)
TACGACGCAGTCAAGGCCAGCGGGT
LOC_Os09g28230
Os.52216.1.S1_at--1132--831Chr09:17145082..17145106 (25 bp)
AGGCCAGCAAGCTCATGGAACGAGT
LOC_Os09g28230
Os.52216.1.S1_at--1156--8511Chr09:17145067..17145091 (25 bp)
TGGAACGAGTGGCTGCTTTCATTGC
LOC_Os09g28230
Os.52216.1.S1_at--1009--3831Chr09:17145055..17145079 (25 bp)
CTGCTTTCATTGCTGGCCATTAAAC
LOC_Os09g28230
Os.52216.1.S1_at--42--4431Chr09:17145040..17145064 (25 bp)
GCCATTAAACTGTGCTTCCAGCTGG
LOC_Os09g28230
Os.52216.1.S1_at--540--8571Chr09:17145018..17145042 (25 bp)
TGGATAATTTGCCTCGTGTTTCTAA
LOC_Os09g28230
Os.52216.1.S1_at--786--10292Chr02:2067897..2068288 (25 bp)
TTTCCTATCTCTATATCTCACTTAT
NONE
Os.52216.1.S1_at--659--1371Chr09:17144823..17144847 (25 bp)
AGAGCCAATACCTTTGATTTTTTGT
LOC_Os09g28230
Os.52216.1.S1_at--820--10391Chr09:17144804..17144828 (25 bp)
TTTTGTTACCTCTCTACTCCATATA
LOC_Os09g28230
Target Sequence 
AAGAGATGGGCGGTCATCTTCCCCGGCGCGAACGGCGGGCTGGACGATCCGCGGATGAACCCGATGGCCGCCGGCGCGCC
GAGCCTGACAAAGCTGGCGTGCGAGAGGATGCTGGTCTGCTCGGCGGGGTTCGATCCGAGGAGGACAAGGGATCGGGCGT
ACTACGACGCAGTCAAGGCCAGCGGGTGGGGACGCGAGGTGGACTGGTTCGAGTCGGAGGGTGAGGGCCACCACTTCTTC
GTCGACAAGCCCGGCAGCCACGAGGCCAGCAAGCTCATGGAACGAGTGGCTGCTTTCATTGCTGGCCATTAAACTGTGCT
TCCAGCTGGATAATTTGCCTCGTGTTTCTAAGAGCAAGGATAACAGTAGAGCTCACTATCTACTATTAGCACATCTTAAA
GCCAACACATATAATAGATTAGCTATAAGGTTGGCTATAATTTTTCTTTTCCTATCTCTATATCTCACTTATACATTTAT
TATTTTTGTCTTGGAGCTTGTGATAAGCTAGCTCTTGTATGAGAGCCAATACCTTTGATTTTTTGTTACCTCTCTACTCC
ATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis