Browse Element(s) Details


Os.19563.1.S1_at

Description gb:CB620568
DB_XREF= gi:29615556
DB_XREF=OSIIEa05O04.r
CLONE=OSIIEa05O04
TID=Os.19563.1
CNT=14
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.19563 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192181.1 (A.thaliana) predicted protein of unknown function (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2822011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28210Os.51063.1.S1_at11/119+17131210..17132474Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g28220Os.19563.1.S1_at11/119+17140404..17142181expressed protein
LOC_Os09g28230Os.52216.1.S1_at11/119+17144775..171460572-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28240OsAffx.6426.1.S1_at11/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_x_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28250NANA9+17153074..17153601hypothetical protein
LOC_Os09g28260NANA9+17157640..17163352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28270NANA9+17166042..17167607hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19563.1.S1_at--1111--8151Chr09:17141665..17141689 (25 bp)
GGAAACGTATCCCACGACGTGGTGA
LOC_Os09g28220
Os.19563.1.S1_at--692--1911Chr09:17141681..17141705 (25 bp)
ACGTGGTGAGGTTGGTCTATCTGCA
LOC_Os09g28220
Os.19563.1.S1_at--266--5531Chr09:17141790..17141814 (25 bp)
GAAAACCAGGTTTACAGTGCAGAGG
LOC_Os09g28220
Os.19563.1.S1_at--480--1091Chr09:17141820..17141844 (25 bp)
AGGGCGCTTGCTATGTTTAATTATG
LOC_Os09g28220
Os.19563.1.S1_at--653--8331Chr09:17141876..17141900 (25 bp)
GGCTGATTTGCAGCGCTTAGTGCAA
LOC_Os09g28220
Os.19563.1.S1_at--556--711Chr09:17141914..17141938 (25 bp)
ATGATGTAGGACCTTCCCATGATCC
LOC_Os09g28220
Os.19563.1.S1_at--922--9311Chr09:17141928..17141952 (25 bp)
TCCCATGATCCATTTGCTACAGCGG
LOC_Os09g28220
Os.19563.1.S1_at--1114--2991Chr09:17141988..17142012 (25 bp)
AATGATCACCACTATTTCCTTTTCT
LOC_Os09g28220
Os.19563.1.S1_at--123--7831Chr09:17142034..17142058 (25 bp)
GGTCATGATCTCTAAGATGCCAGTT
LOC_Os09g28220
Os.19563.1.S1_at--79--7951Chr09:17142067..17142091 (25 bp)
GGATATCTTCACAGACATTGCACTT
LOC_Os09g28220
Os.19563.1.S1_at--170--5671Chr09:17142080..17142104 (25 bp)
GACATTGCACTTGAACCGTACTATT
LOC_Os09g28220
Target Sequence 
GGAAACGTATCCCACGACGTGGTGAGGTTGGTCTATCTGCAGAGGAGATTCAGAAGTTCGAGGATTTGGGCTATGTGATG
AGTGGGAGTAGGCACCAGAGGATGAATGCTATCCGTATAAGGAAGGAAAACCAGGTTTACAGTGCAGAGGATAAGAGGGC
GCTTGCTATGTTTAATTATGAGGAGAAGTCGAAGCGAGAGCACAAGGTCATGGCTGATTTGCAGCGCTTAGTGCAAAGAA
CCATTGGAAATGATGTAGGACCTTCCCATGATCCATTTGCTACAGCGGATGGCTGAGTAAGGATTTATNAGCTGTTATAC
AATGAATGATCACCACTATTTCCTTTTCTTTTTATGATCCCTATAGTATAGGTCATGATCTCTAAGATGCCAGTTAGTGC
TGTGGATATCTTCACAGACATTGCACTTGAACCGTACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis