Browse Element(s) Details


OsAffx.6426.1.S1_at

Description tigr:9637.m02494
TID=OsAffx.6426.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2824011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28210Os.51063.1.S1_at11/119+17131210..17132474Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g28220Os.19563.1.S1_at11/119+17140404..17142181expressed protein
LOC_Os09g28230Os.52216.1.S1_at11/119+17144775..171460572-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28240OsAffx.6426.1.S1_at11/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_x_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28250NANA9+17153074..17153601hypothetical protein
LOC_Os09g28260NANA9+17157640..17163352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28270NANA9+17166042..17167607hypothetical protein
LOC_Os09g28280Os.37075.1.S1_at11/119+17170659..171718062-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28290OsAffx.6428.1.S1_at11/119+17174189..17174891hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6426.1.S1_at--200--3371Chr09:17149155..17149179 (25 bp)
CACCGGCAATGAGCTGTGGCGTAGT
LOC_Os09g28240
OsAffx.6426.1.S1_at--66--3991Chr09:17149124..17149148 (25 bp)
CGTGGACAACGAAGGGCATTACAGG
LOC_Os09g28240
OsAffx.6426.1.S1_at--1022--9851Chr09:17149105..17149129 (25 bp)
TACAGGTTGGTGACAAGGTCCCGGC
LOC_Os09g28240
OsAffx.6426.1.S1_at--816--1471Chr09:17149062..17149086 (25 bp)
AGCAAAGGAAGTGGCCACCAGCGAC
LOC_Os09g28240
OsAffx.6426.1.S1_at--359--471Chr09:17148503..17149012 (25 bp)
ATCTCCGACATCATATCCTTACAAA
LOC_Os09g28240
OsAffx.6426.1.S1_at--537--1831Chr09:17148476..17148500 (25 bp)
ACGATTCAGAGGATGTTTCACGGGA
LOC_Os09g28240
OsAffx.6426.1.S1_at--458--8011Chr09:17148376..17148400 (25 bp)
GGAGGTTTCACCAGGATGCTCGCGC
LOC_Os09g28240
OsAffx.6426.1.S1_at--613--5251Chr09:17148334..17148358 (25 bp)
GAATCGCGCGATTCCTAGAAGGATT
LOC_Os09g28240
OsAffx.6426.1.S1_at--279--9251Chr09:17148322..17148346 (25 bp)
TCCTAGAAGGATTCGCCATGATCTG
LOC_Os09g28240
OsAffx.6426.1.S1_at--1023--4331Chr09:17148307..17148331 (25 bp)
CCATGATCTGGAGAAGCCGACGGAT
LOC_Os09g28240
OsAffx.6426.1.S1_at--16--7211Chr09:17148223..17148247 (25 bp)
GTCGTCGTTCTCGTTTTTGAGCGCT
LOC_Os09g28240
Target Sequence 
CACCGGCAATGAGCTGTGGCGTAGTGTGAGACGTGGACAACGAAGGGCATTACAGGTTGGTGACAAGGTCCCGGCGCGGC
GTGGGCCATCGATAGCAAAGGAAGTGGCCACCAGCGACGAGCTTTGGCGTGGGGTGTGGACGGCGGAGAACGCGGCCGCC
AGCGACGATCTCCGACATCATATCCTTACAAAACACGATTCAGAGGATGTTTCACGGGAAGCAGAGGAGTCGACGGACGG
CGAGGTGCCGCTGGAAGGAAGCGAGGAATTGAGCGCGGAGGCGCGCGATTACGAGGAGGTTTCACCAGGATGCTCGCGCC
GGTGGAAGGAAGCGAGGAATCGCGCGATTCCTAGAAGGATTCGCCATGATCTGGAGAAGCCGACGGATGGTGCGCGCGCC
GGCGGGAGGAAGCGAGGAATCGGGAAGCCGGCGTTTGGCGAGCGTTGGTCGTCGTTCTCGTTTTTGAGCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis