Browse Element(s) Details


Os.50604.1.S1_at

Description gb:AK122043.1
DB_XREF= gi:37991689
TID=Os.50604.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50604 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113K20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113K20, full insert sequence.
FL= gb:AK122043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3233011/11endonuclease/exonuclease/phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32280OsAffx.828.1.S1_x_at1/115+18736757..18737946retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g32290OsAffx.9949.1.S1_at1/115+18739991..18745654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g32300OsAffx.30227.2.S1_at11/115+18747126..18747926hypothetical protein
LOC_Os05g32310OsAffx.14914.1.S1_x_at8/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310Os.26574.1.S1_at4/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32310OsAffx.14914.2.S1_x_at3/115+18755520..18758476U6 snRNA-associated Sm-like protein LSm5, putative, expressed
LOC_Os05g32320Os.16089.1.A1_at11/115+18759608..18762691folate/biopterin transporter family protein, expressed
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g32360Os.4626.1.S1_at11/115+18785338..18789028Protein kinase domain containing protein, expressed
LOC_Os05g32370Os.55790.1.S1_at11/115+18789220..18792756Helicase associated domain family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50604.1.S1_at--772--3271Chr05:18765901..18765925 (25 bp)
CAACACACTGCGGTGAATGCCAAAT
LOC_Os05g32330
Os.50604.1.S1_at--1026--9051Chr05:18765831..18765855 (25 bp)
TGCATTGCACATTGGTTCCCAACTA
LOC_Os05g32330
Os.50604.1.S1_at--991--10851Chr05:18765820..18765844 (25 bp)
TTGGTTCCCAACTAGCAGCAATGAG
LOC_Os05g32330
Os.50604.1.S1_at--704--691Chr05:18765800..18765824 (25 bp)
ATGAGCGCAGCCTTAGTAGCATTCA
LOC_Os05g32330
Os.50604.1.S1_at--124--2071Chr05:18765701..18765725 (25 bp)
ACTTGAGTTCCATTCTCAGTTCTCA
LOC_Os05g32330
Os.50604.1.S1_at--974--1711Chr05:18765677..18765701 (25 bp)
ACCATGAGTAGACCCAGCCCAAGAA
LOC_Os05g32330
Os.50604.1.S1_at--805--2311Chr05:18765635..18765659 (25 bp)
AAAGGATTGGTGCATCAGTGTGCTA
LOC_Os05g32330
Os.50604.1.S1_at--1010--3451Chr05:18765620..18765644 (25 bp)
CAGTGTGCTAGTTTCGTTTTGTGAC
LOC_Os05g32330
Os.50604.1.S1_at--198--10071Chr05:18765570..18765594 (25 bp)
TAGTCCCTGCTCTTCAATCATTCAT
LOC_Os05g32330
Os.50604.1.S1_at--793--9591Chr05:18765549..18765573 (25 bp)
TCATTTGTGGACTGTATGCTTCCCC
LOC_Os05g32330
Os.50604.1.S1_at--780--6911Chr05:18765536..18765560 (25 bp)
GTATGCTTCCCCTCATGTTTGAGAA
LOC_Os05g32330
Target Sequence 
CAACACACTGCGGTGAATGCCAAATAATTTACTATGAAAGAAAGACATTACATAAATACTATGTTTTGTGTGCATTGCAC
ATTGGTTCCCAACTAGCAGCAATGAGCGCAGCCTTAGTAGCATTCAGGTTGTACGAATAGATTTATTTGTCAACAGTAAG
CTTTACGATATGATGTTTGTACATTTATATTTTCGGACAAACTTGAGTTCCATTCTCAGTTCTCACCATGAGTAGACCCA
GCCCAAGAACAAAGTATAAAACTATCAAAGGATTGGTGCATCAGTGTGCTAGTTTCGTTTTGTGACTGTAAACAATTTTC
CATTTCTGTTCTAGTCCCTGCTCTTCAATCATTCATTTGTGGACTGTATGCTTCCCCTCATGTTTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis