Browse Element(s) Details


Os.4626.1.S1_at

Description gb:AK073808.1
DB_XREF= gi:32983831
TID=Os.4626.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067D07, full insert sequence.
FL= gb:AK073808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3236011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32320Os.16089.1.A1_at11/115+18759608..18762691folate/biopterin transporter family protein, expressed
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g32360Os.4626.1.S1_at11/115+18785338..18789028Protein kinase domain containing protein, expressed
LOC_Os05g32370Os.55790.1.S1_at11/115+18789220..18792756Helicase associated domain family protein, expressed
LOC_Os05g32380OsAffx.14915.1.S1_at11/115+18803258..18804694lipase class 3 family protein, putative
LOC_Os05g32390Os.49239.1.S1_at11/115+18808857..18817716GTP-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4626.1.S1_at--1078--9691Chr05:18788436..18788460 (25 bp)
TCAAATCAGACCAGGCCAGCCGATG
LOC_Os05g32360
Os.4626.1.S1_at--319--8651Chr05:18788487..18788511 (25 bp)
TGGGCCAGGCCATCACTATGCAAAA
LOC_Os05g32360
Os.4626.1.S1_at--1010--911Chr05:18788526..18788550 (25 bp)
AGGCTCAAGCAGGTATCCACAGGGT
LOC_Os05g32360
Os.4626.1.S1_at--1042--991Chr05:18788565..18788589 (25 bp)
AGGATATCCGAACCGCGGCGGACAA
LOC_Os05g32360
Os.4626.1.S1_at--1119--8251Chr05:18788599..18788623 (25 bp)
GGCAGCTATGGAAATGCCCCTTACC
LOC_Os05g32360
Os.4626.1.S1_at--1080--2931Chr05:18788738..18788762 (25 bp)
AAGGCGGCCCATATGGTCCTTCTGG
LOC_Os05g32360
Os.4626.1.S1_at--53--8411Chr05:18788760..18788784 (25 bp)
TGGCCCAGGCCGAGGGTCAAATTAT
LOC_Os05g32360
Os.4626.1.S1_at--673--1051Chr05:18788793..18788817 (25 bp)
AGGTGGTTCTCGCAACCAGCAGCAG
LOC_Os05g32360
Os.4626.1.S1_at--947--5531Chr05:18788822..18788846 (25 bp)
GAAACTGGCAGTAGTACGTTACCTA
LOC_Os05g32360
Os.4626.1.S1_at--144--591Chr05:18788861..18788885 (25 bp)
ATGCCAATTGTCTTAAACTCTGATG
LOC_Os05g32360
Os.4626.1.S1_at--313--10031Chr05:18788934..18788958 (25 bp)
TAGAGCGTGTATTGCCCTGAATCCA
LOC_Os05g32360
Target Sequence 
TCAAATCAGACCAGGCCAGCCGATGAACAACCCCCATGCGCCGATGGCTGCTGGGCCAGGCCATCACTATGCAAAACCCA
GAGGGCCAGGAGGCTCAAGCAGGTATCCACAGGGTGGGAACCAAGGTGGAGGATATCCGAACCGCGGCGGACAAGGTGGT
GGTGGCAGCTATGGAAATGCCCCTTACCCTCAACAAGGTCGAGGGCCGCCGCCACCGTACCCTGGCAGTGGAATGGCCGG
AACAGGTGGCCCAAGGGGTGGCGTTGGTGGTGGCTATGGAGGAGGATCAAATTATCCCCAGCAAGGCGGCCCATATGGTC
CTTCTGGCCCAGGCCGAGGGTCAAATTATCCCCAACAAGGTGGTTCTCGCAACCAGCAGCAGTACGGAAACTGGCAGTAG
TACGTTACCTAAACTCAGCAACACTATGCCAATTGTCTTAAACTCTGATGTTGATGCTAACTTGTGCTTAATNTATTCTA
TTGGGCATTACATTTTGTTAGAGCGTGTATTGCCCTGAATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis