Browse Element(s) Details


OsAffx.14915.1.S1_at

Description tigr:9633.m02964
TID=OsAffx.14915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT002718 At1g06800F4H5_10
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3238011/11lipase class 3 family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g32360Os.4626.1.S1_at11/115+18785338..18789028Protein kinase domain containing protein, expressed
LOC_Os05g32370Os.55790.1.S1_at11/115+18789220..18792756Helicase associated domain family protein, expressed
LOC_Os05g32380OsAffx.14915.1.S1_at11/115+18803258..18804694lipase class 3 family protein, putative
LOC_Os05g32390Os.49239.1.S1_at11/115+18808857..18817716GTP-binding protein, putative, expressed
LOC_Os05g32400NANA5+18820276..18826921retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14915.1.S1_at--694--8531Chr05:18803808..18803832 (25 bp)
TGGAGTCCGGCTTCGTGGACCTCTA
LOC_Os05g32380
OsAffx.14915.1.S1_at--815--10611Chr05:18803797..18803821 (25 bp)
TTCGTGGACCTCTACACCGACAAGG
LOC_Os05g32380
OsAffx.14915.1.S1_at--231--7471Chr05:18803794..18803818 (25 bp)
GTGGACCTCTACACCGACAAGGACC
LOC_Os05g32380
OsAffx.14915.1.S1_at--1017--9011Chr05:18803755..18803779 (25 bp)
TGCAAGTACTCCGCGCGCGAGCAGG
LOC_Os05g32380
OsAffx.14915.1.S1_at--999--1031Chr05:18803733..18803757 (25 bp)
AGGTGCTCACGGAGGTCCGCCGCCT
LOC_Os05g32380
OsAffx.14915.1.S1_at--526--9451Chr05:18803649..18803673 (25 bp)
TCGGCAGCGCGCTGGCGATGATCAG
LOC_Os05g32380
OsAffx.14915.1.S1_at--803--6291Chr05:18803633..18803657 (25 bp)
GATGATCAGCGCGTACGACATCGCG
LOC_Os05g32380
OsAffx.14915.1.S1_at--963--4691Chr05:18803560..18803584 (25 bp)
GCGGCGGTGTGCGTGTACTCGTTCG
LOC_Os05g32380
OsAffx.14915.1.S1_at--187--5911Chr05:18803335..18803359 (25 bp)
GAGCTCGCGCTCGACCACAAGCGGT
LOC_Os05g32380
OsAffx.14915.1.S1_at--274--2671Chr05:18803317..18803341 (25 bp)
AAGCGGTCGCCGTTCCTCAAGGACA
LOC_Os05g32380
OsAffx.14915.1.S1_at--1070--7771Chr05:18803313..18803337 (25 bp)
GGTCGCCGTTCCTCAAGGACACGCT
LOC_Os05g32380
Target Sequence 
TGGAGTCCGGCTTCGTGGACCTCTACACCGACAAGGACCCCACCTGCCGCTTCTGCAAGTACTCCGCGCGCGAGCAGGTG
CTCACGGAGGTCCGCCGCCTCGTCACCCGCTACGCCGCGCTCGGCGAGGACGTGAGCGTGACGGTGACGGGGCACAGCCT
CGGCAGCGCGCTGGCGATGATCAGCGCGTACGACATCGCGGAGTCGGGCGCCGCGAGCGCGGCGCACGGCGGCGGGAAGG
AGGCGGCGGCGGCGGTGTGCGTGTACTCGTTCGCGGGGCCGAGGGTGGGGAACGCGAGGTTCAAGGAGAGGTTCGAGGGG
GAGCTCGGGGTGAAGGCGCTGCGGGTGGTGAACGTGCACGACGGGGTGGCGCGGATGCCGGGGATCCTGCTGAACGAGGG
GGCGCCGGCGGCGCTGCGGCGGGTGGCGGAGGGCATCCTCCGGGTGCCGTGGTGCTACGCGCACGTCGGCGTGGAGCTCG
CGCTCGACCACAAGCGGTCGCCGTTCCTCAAGGACACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis