Browse Element(s) Details


Os.55790.1.S1_at

Description gb:AK108808.1
DB_XREF= gi:32994017
TID=Os.55790.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55790 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D04, full insert sequence.
FL= gb:AK108808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3237011/11Helicase associated domain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32330Os.5673.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32330Os.50604.1.S1_at11/115+18762799..18766799endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os05g32340OsAffx.25367.1.S1_at1/115+18771955..18776279retrotransposon, putative, centromere-specific, expressed
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g32360Os.4626.1.S1_at11/115+18785338..18789028Protein kinase domain containing protein, expressed
LOC_Os05g32370Os.55790.1.S1_at11/115+18789220..18792756Helicase associated domain family protein, expressed
LOC_Os05g32380OsAffx.14915.1.S1_at11/115+18803258..18804694lipase class 3 family protein, putative
LOC_Os05g32390Os.49239.1.S1_at11/115+18808857..18817716GTP-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55790.1.S1_at--760--9171Chr05:18789771..18789795 (25 bp)
TGCCGCGAGAGCTTCGTGCAGCACC
LOC_Os05g32370
Os.55790.1.S1_at--574--1391Chr05:18789557..18789581 (25 bp)
AGACGGTGTTCGTCCACCCGAGCTC
LOC_Os05g32370
Os.55790.1.S1_at--363--10811Chr05:18789501..18789525 (25 bp)
TTGTACCACGAGCTGGTGCTCACGA
LOC_Os05g32370
Os.55790.1.S1_at--1134--7291Chr05:18789486..18789510 (25 bp)
GTGCTCACGACCAAGGAGTACATGA
LOC_Os05g32370
Os.55790.1.S1_at--667--6031Chr05:18789426..18789450 (25 bp)
GAGATCGCGCCGCACTACTACGAGC
LOC_Os05g32370
Os.55790.1.S1_at--150--5711Chr05:18789358..18789382 (25 bp)
GACTACGCCGCAAGAGCAGACGACG
LOC_Os05g32370
Os.55790.1.S1_at--130--8431Chr05:18789334..18789358 (25 bp)
GGCCGGCTCTACACCAACGAAGCAG
LOC_Os05g32370
Os.55790.1.S1_at--1068--2591Chr05:18789319..18789343 (25 bp)
AACGAAGCAGACTCCGAATCTGAAT
LOC_Os05g32370
Os.55790.1.S1_at--439--5251Chr05:18789304..18789328 (25 bp)
GAATCTGAATAGTTTCTTCGACGTG
LOC_Os05g32370
Os.55790.1.S1_at--1132--10611Chr05:18789288..18789312 (25 bp)
TTCGACGTGTAAAGAGTGCCATTGG
LOC_Os05g32370
Os.55790.1.S1_at--718--7271Chr05:18789273..18789297 (25 bp)
GTGCCATTGGAACTTGTAAATAGCT
LOC_Os05g32370
Target Sequence 
TGCCGCGAGAGCTTCGTGCAGCACCGCACCATGCGGCGCGCGCGGGACGTGCGGGACCAGCTGGGGGCGCTGCTTGAGCG
GGTGGAGATCGCGCCGTGCTCCTCCGCCGGCGGCGGCGACCTCGACGCGGTCAGGAAGGCGGTCACGGCGGGCTACTTCC
GCCACGCTGCGCGGCTGCAGAGGGACGGGTCGTACCGCGCCGTGAAGAGCCGGCAGACGGTGTTCGTCCACCCGAGCTCC
GGGGTGGCGCAGGCGCCGCCGCGGTGGGCGTTGTACCACGAGCTGGTGCTCACGACCAAGGAGTACATGAGGCAGGTGAC
GGAGCTCAAGCCGGAGTGGCCGGTGGAGATCGCGCCGCACTACTACGAGCGCAAGGACGTCGACGAGCCTGAGCCCAAGA
AGACGGCGGCGGCGACTACGCCGCAAGAGCAGACGACGGCCGGCTCTACACCAACGAAGCAGACTCCGAATCTGAATAGT
TTCTTCGACGTGTAAAGAGTGCCATTGGAACTTGTAAATAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis