Browse Element(s) Details


Os.13766.1.S1_at

Description gb:AK060399.1
DB_XREF= gi:32970417
TID=Os.13766.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1142C05.34 (B1142C05.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-B08, full insert sequence.
FL= gb:AK060399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5164011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51630Os.33073.1.S2_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.33073.1.S1_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.50543.1.S1_x_at1/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51640Os.13766.1.S1_at11/111+30005938..30009857expressed protein
LOC_Os01g51650OsAffx.21543.1.S1_at11/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51650OsAffx.655.1.S1_x_at2/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009902biological_processchloroplast relocation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13766.1.S1_at--468--7611Chr01:30006475..30006499 (25 bp)
GGGCAATAAGCATCCCCTGATGAAA
LOC_Os01g51640
Os.13766.1.S1_at--1119--10851Chr01:30006394..30006418 (25 bp)
TTGGAGCATTTCTTCACGCGTACAT
LOC_Os01g51640
Os.13766.1.S1_at--201--4831Chr01:30006261..30006285 (25 bp)
GCTCTTGTGATTTGCTGTCTTGGAT
LOC_Os01g51640
Os.13766.1.S1_at--520--6691Chr01:30006155..30006179 (25 bp)
GTTCCTTTTTCTTGATACACCTTGA
LOC_Os01g51640
Os.13766.1.S1_at--432--5431Chr01:30006132..30006156 (25 bp)
GAACCATCCAGGTACATGCACATGC
LOC_Os01g51640
Os.13766.1.S1_at--463--651Chr01:30006117..30006141 (25 bp)
ATGCACATGCTTCCGATCGGTTGTG
LOC_Os01g51640
Os.13766.1.S1_at--372--10391Chr01:30006088..30006112 (25 bp)
TTTTCTCCTTGTACTTGGCTGTACT
LOC_Os01g51640
Os.13766.1.S1_at--334--5531Chr01:30006061..30006085 (25 bp)
GAAACTGGTATTTCTCCTTTTCTTG
LOC_Os01g51640
Os.13766.1.S1_at--95--1691Chr01:30005987..30006011 (25 bp)
AGCCTTCTCATGTATGTAGTGGTTC
LOC_Os01g51640
Os.13766.1.S1_at--163--7891Chr01:30005967..30005991 (25 bp)
GGTTCTAGCATTCATTTGGCCAGTC
LOC_Os01g51640
Os.13766.1.S1_at--675--8451Chr01:30005951..30005975 (25 bp)
TGGCCAGTCTTTTAACGGATTTTAT
LOC_Os01g51640
Target Sequence 
GGGCAATAAGCATCCCCTGATGAAATCCAAAGCTATTGCGAAGCCAACTAAAGAGGCAGCTGGTCAGTCAGNAGACACCC
TTTGGAGCATTTCTTCACGCGTACATGGAGCTGGAACCAGATGGGGCGANTTAGCTGGACCTAAAAGGAACCCAAATATC
CTCCTTCAAAAAGAAAAGCGATTTAGGTGATGGCTTGGCAATTATCAGTATTTAGCTCTTGTGATTTGCTGTCTTGGATG
AATCTGTTCAGGGAAGAGTCTATTTATCTGGAACNTTGTCCTCACTGGAATACTTCTAGTGGACTGTTAATGTAAATGTA
GTTCCTTTTTCTTGATACACCTTGAACCATCCAGGTACATGCACATGCTTCCGATCGGTTGTGCTCCTTTTCTCCTTGTA
CTTGGCTGTACTGAGAAACTGGTATTTCTCCTTTTCTTGTTACAATTGAAATAGTGGCTTTTTGCCTGTGAAGGCGCAAT
AGCAATACNNNAGCCTTCTCATGTATGTAGTGGTTCTAGCATTCATTTGGCCAGTCTTTTAACGGATTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis