Browse Element(s) Details


OsAffx.21543.1.S1_at

Description gb:NM_191737.1
DB_XREF= gi:34910557
GEN=B1131B07.6
TID=OsAffx.21543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1131B07.6 (B1131B07.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5165011/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51630Os.33073.1.S2_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.33073.1.S1_s_at11/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51630Os.50543.1.S1_x_at1/111+29979439..30002205Myosin head family protein, expressed
LOC_Os01g51640Os.13766.1.S1_at11/111+30005938..30009857expressed protein
LOC_Os01g51650OsAffx.21543.1.S1_at11/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51650OsAffx.655.1.S1_x_at2/111+30012289..30019007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g51660OsAffx.11563.1.S1_at10/111+30022688..30023250hypothetical protein
LOC_Os01g51670Os.37243.1.S1_at11/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_x_at9/111+30035223..30036213expressed protein
LOC_Os01g51670Os.37243.2.S1_at1/111+30035223..30036213expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21543.1.S1_at--1026--3531Chr01:30018924..30018948 (25 bp)
CATTAGGGTTCAGGCGGAGGGTTCA
LOC_Os01g51650
OsAffx.21543.1.S1_at--546--6751Chr01:30018904..30018928 (25 bp)
GTTCAGGTAGTCAGCTGGCTGCTCC
LOC_Os01g51650
OsAffx.21543.1.S1_at--241--9671Chr01:30018894..30018918 (25 bp)
TCAGCTGGCTGCTCCACAGGCGGTT
LOC_Os01g51650
OsAffx.21543.1.S1_at--20--8651Chr01:30018844..30018868 (25 bp)
TGGGAGCGGATGGTCTTGCCCAAAC
LOC_Os01g51650
OsAffx.21543.1.S1_at--496--6231Chr01:30018836..30018860 (25 bp)
GATGGTCTTGCCCAAACGCTGGGAA
LOC_Os01g51650
OsAffx.21543.1.S1_at--1038--7131Chr01:30018832..30018856 (25 bp)
GTCTTGCCCAAACGCTGGGAAGGAT
LOC_Os01g51650
OsAffx.21543.1.S1_at--776--3891Chr01:30018818..30018842 (25 bp)
CTGGGAAGGATATGGTGCCCGATCA
LOC_Os01g51650
OsAffx.21543.1.S1_at--233--10111Chr01:30018808..30018832 (25 bp)
TATGGTGCCCGATCAAGGGAGTTAT
LOC_Os01g51650
OsAffx.21543.1.S1_at--1116--9691Chr01:30018796..30018820 (25 bp)
TCAAGGGAGTTATGTGTAAGGATCT
LOC_Os01g51650
OsAffx.21543.1.S1_at--960--7931Chr01:30018777..30018801 (25 bp)
GGATCTTGGTGAGAACCATTTTTTG
LOC_Os01g51650
OsAffx.21543.1.S1_at--306--711Chr01:30018712..30018736 (25 bp)
ATGATGGCCCATGGATGTTTGGGAA
LOC_Os01g51650
Target Sequence 
CATTAGGGTTCAGGCGGAGGGTTCAGGTAGTCAGCTGGCTGCTCCACAGGCGGTTGGGAAGGTGCTAGCAGAGAAGTTAG
TGGGAGCGGATGGTCTTGCCCAAACGCTGGGAAGGATATGGTGCCCGATCAAGGGAGTTATGTGTAAGGATCTTGGTGAG
AACCATTTTTTGTTCACCTTCCTTCAGGGGTCAGGGAAGAAGAGGGCGCTGGATGATGGCCCATGGATGTTTGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis