Browse Element(s) Details


Os.14195.1.S1_at

Description gb:AK101290.1
DB_XREF= gi:32986499
TID=Os.14195.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033G09, full insert sequence.
FL= gb:AK101290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1920010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19170Os.57195.1.S1_at11/113+10727582..10728584expressed protein
LOC_Os03g19180OsAffx.12933.1.S1_at11/113+10729174..10730117hypothetical protein
LOC_Os03g19190Os.52477.1.S1_at11/113+10731625..10738874BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g19200Os.14195.1.S1_at10/113+10751427..10754538TPR Domain containing protein, expressed
LOC_Os03g19210OsAffx.12934.1.S1_at11/113+10775369..10775596hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14195.1.S1_at--140--4051Chr03:10751798..10751822 (25 bp)
CGATCCATCAGCAGGACGTCGCCGG
LOC_Os03g19200
Os.14195.1.S1_at--558--1291Chr03:10751724..10751748 (25 bp)
AGATCCAGCACGGTGGCGGGAAACC
LOC_Os03g19200
Os.14195.1.S1_at--180--5211Chr03:10751687..10751711 (25 bp)
GAATTGTTCGATACATCTTCGCTAT
LOC_Os03g19200
Os.14195.1.S1_at--734--3551Chr03:10751674..10751698 (25 bp)
CATCTTCGCTATTGTACAGTTTGGG
LOC_Os03g19200
Os.14195.1.S1_at--187--5851Chr03:10751617..10751641 (25 bp)
GACCATTCAGAAAACCAGCACCAAA
LOC_Os03g19200
Os.14195.1.S1_at--905--8051Chr03:10751541..10751565 (25 bp)
TGGAGGGTAAATTTTTGGTTGCATC
LOC_Os03g19200
Os.14195.1.S1_at--510--7911Chr03:10751525..10751549 (25 bp)
GGTTGCATCTTCTTTAATGTGAGTT
LOC_Os03g19200
Os.14195.1.S1_at--47--1251Chr03:10751504..10751528 (25 bp)
AGTTGTTACAGTGCAGTTAGCCCTC
LOC_Os03g19200
Os.14195.1.S1_at--930--4291Chr03:10751475..10751499 (25 bp)
CCTACCTGTGTTGTTGAGCTACTGG
LOC_Os03g19200
Os.14195.1.S1_at--611--5891NONE
GAGCTACTGGTACCCCTAATATAAT
NONE
Os.14195.1.S1_at--601--411Chr03:10751437..10751461 (25 bp)
ATCATGTGTATACATCCTCTCCTTT
LOC_Os03g19200
Target Sequence 
CGATCCATCAGCAGGACGTCGCCGGCGCGATCTGATGCGGAGNGTACGGACCACGCGGGGATGGATGGAACAGAAGATCC
AGCACGGTGGCGGGAAACCGGAGAGAAGTTTGAATTGTTCGATACATCTTCGCTATTGTACAGTTTGGGGAGAGGGGTAC
TTGAAAAAAAAAANTTGAACCGGACCATTCAGAAAACCAGCACCAAAAAAAAAAAATTCAGAGTGGCNAGGCCAAATTGT
TGGCAGGGAGGTGTGGATTGGAGGGTAAATTTTTGGTTGCATCTTCTTTAATGTGAGTTGTTACAGTGCAGTTAGCCCTC
NACTCCTACCTGTGTTGTTGAGCTACTGGTACCCCTAATATAATCATGTGTATACATCCTCTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis