Browse Element(s) Details


Os.57195.1.S1_at

Description gb:AK111121.1
DB_XREF= gi:32996330
TID=Os.57195.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C02, full insert sequence.
FL= gb:AK111121.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1917011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19140NANA3+10703073..10703738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g19150NANA3+10711296..10714341retrotransposon protein, putative, unclassified
LOC_Os03g19160Os.35344.18.S1_x_at11/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19160Os.35344.3.S1_x_at9/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19160OsAffx.22940.5.S1_x_at3/113+10718699..10723852transposon protein, putative, Mutator sub-class
LOC_Os03g19170Os.57195.1.S1_at11/113+10727582..10728584expressed protein
LOC_Os03g19180OsAffx.12933.1.S1_at11/113+10729174..10730117hypothetical protein
LOC_Os03g19190Os.52477.1.S1_at11/113+10731625..10738874BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g19200Os.14195.1.S1_at10/113+10751427..10754538TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57195.1.S1_at--552--1691Chr03:10728327..10728348 (22 bp)
AGCCAGATGGTGACGTGCCGATCGA
LOC_Os03g19170
Os.57195.1.S1_at--1098--1851Chr03:10728165..10728285 (25 bp)
ACGACGGCCAGGTGTACAGCTGCTG
LOC_Os03g19170
Os.57195.1.S1_at--1057--1391Chr03:10728051..10728075 (25 bp)
AGACGGAGGACGTGCTCAACTGCGT
LOC_Os03g19170
Os.57195.1.S1_at--491--5691Chr03:10727832..10727856 (25 bp)
GACTTCAACGACTTGGAGCCGCAGA
LOC_Os03g19170
Os.57195.1.S1_at--28--6252Chr04:29352219..29352238 (20 bp)
GATGGGAGACTACCCGGACATCTAC
NONE
Os.57195.1.S1_at--1022--9531Chr03:10727690..10727714 (25 bp)
TCTTTGGTCGCTGAGCAGGTTGCAT
LOC_Os03g19170
Os.57195.1.S1_at--193--4811Chr03:10727669..10727693 (25 bp)
GCATCGGCGGCCTTAAAGACTGACG
LOC_Os03g19170
Os.57195.1.S1_at--968--2331Chr03:10727655..10727679 (25 bp)
AAAGACTGACGCTGTCATGCTACTC
LOC_Os03g19170
Os.57195.1.S1_at--740--631Chr03:10727639..10727663 (25 bp)
ATGCTACTCCGTACTGATCAGGCCT
LOC_Os03g19170
Os.57195.1.S1_at--375--411Chr03:10727623..10727647 (25 bp)
ATCAGGCCTACTCCGTACTGATCAG
LOC_Os03g19170
Os.57195.1.S1_at--607--9811Chr03:10727590..10727614 (25 bp)
TAACGGTGTTAATTCAGTGCTGATT
LOC_Os03g19170
Target Sequence 
AGCCAGATGGTGACGTGCCGATCGACCCCTTGCCGGGCTTGCCATCGAGATCCCTGCGCTGCTTCGACGACGGCCAGGTG
TACAGCTGCTGCGAGGGCGCGTACAGGCTGAACCCGTCGGGGGTGATCGCCGTGCCGCCCGGGGAGGTGGACAGCTACTG
CGGCGGGGCGTGCGTGGTGGAGACGGAGGACGTGCTCAACTGCGTGGCGAGCGCGCTGGACGGCTTCCGGTTCTTCAACG
GCGCCTCCGTCGAGGACGCGCGCTACGCGCTCAGGAGGGGATGCAGCCACACCATCAAGAGAGGGGACTTCAACGACTTG
GAGCCGCAGATGGGAGACTACCCGGACATCTACGGCGACAACAGCAGCGACGGCGGCGAGGACAACGCCGCTTCGCCGCG
TTTGCTCGCGTTTCTTGGCGCCGCCGCCGCCGCCGCATGGCTGCTGCTCTTTGGTCGCTGAGCAGGTTGCATCGGCGGCC
TTAAAGACTGACGCTGTCATGCTACTCCGTACTGATCAGGCCTACTCCGTACTGATCAGGCCGGTTTTAACGGTGTTAAT
TCAGTGCTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis