Browse Element(s) Details


Os.14254.1.S1_at

Description gb:AK120990.1
DB_XREF= gi:37990613
TID=Os.14254.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023043E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043E08, full insert sequence.
FL= gb:AK120990.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2938011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29350OsAffx.30075.1.S1_at11/119+17821799..17822254hypothetical protein
LOC_Os09g29360OsAffx.30076.1.S1_at11/119+17825478..17827459Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29370NANA9+17829901..17833915Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29380Os.14254.1.S1_at11/119+17834904..17837015expressed protein
LOC_Os09g29390Os.14537.1.S1_at11/119+17842410..17843627Blue copper protein precursor, putative, expressed
LOC_Os09g29404OsAffx.23081.1.S1_at11/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S1_at10/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S2_at8/119+17850430..17862821Isoamylase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14254.1.S1_at--315--1951Chr09:17835602..17835626 (25 bp)
ACGGCCGTGCCGTTCTACAATAGGG
LOC_Os09g29380
Os.14254.1.S1_at--380--4491Chr09:17835610..17835634 (25 bp)
GCCGTTCTACAATAGGGCCAGGAAA
LOC_Os09g29380
Os.14254.1.S1_at--440--2551Chr09:17835928..17835952 (25 bp)
AACTGCATTGGAGGTTGTGGAGCAC
LOC_Os09g29380
Os.14254.1.S1_at--1022--8171Chr09:17836731..17836755 (25 bp)
GGAATTCAAACCATAGCCAAGCATC
LOC_Os09g29380
Os.14254.1.S1_at--425--1531Chr09:17836750..17836774 (25 bp)
AGCATCTGGTGGATCAGAAGGCCCA
LOC_Os09g29380
Os.14254.1.S1_at--174--6731Chr09:17836813..17836837 (25 bp)
GTTCTTTCTAAGCATCTATTGTGTA
LOC_Os09g29380
Os.14254.1.S1_at--550--231Chr09:17836839..17836863 (25 bp)
ATATATATTGTGATGCCCTAAAATG
LOC_Os09g29380
Os.14254.1.S1_at--1049--8671Chr09:17836900..17836924 (25 bp)
TGTGTTGGATGCTCGAAGCTGAAGC
LOC_Os09g29380
Os.14254.1.S1_at--957--5391Chr09:17836914..17836938 (25 bp)
GAAGCTGAAGCATCCTGTAATCTCG
LOC_Os09g29380
Os.14254.1.S1_at--795--5391Chr09:17836920..17836944 (25 bp)
GAAGCATCCTGTAATCTCGTTGTAA
LOC_Os09g29380
Os.14254.1.S1_at--308--5571Chr09:17836987..17837011 (25 bp)
GAAAGAACATATTCTTCTGCTGTTG
LOC_Os09g29380
Target Sequence 
ACGGCCGTGCCGTTCTACAATAGGGCCAGGAAAGCCGAAGATGAGGTGACAAAAAATGTGGAAACTGCATTGGAGGTTGT
GGAGCACGCCGCGGNAGGNTGACAGAGAAGTTAGCTGCTAATGTGNCCAATGCTCTANCCNGAGNATGGTACCCNTGCAT
AAGTTGGCCCGAGGAGGTTGAGTACANTTGCTGAGATAGTGGATAAGGATGCACAGAAGGTTGAAATCATCATAAAGAAG
ATTGAAGATGTCANCAATCGGATAGACGCNTGCTNGTGGAGCCTGTCATTGAAGAGCTCGAAAANGGAATTCAAACCATA
GCCAAGCATCTGGTGGATCAGAAGGCCCANAAATTATTCTTGTTGTAAATATCGTTATTTTCTATTTTGTTCTTTCTAAG
CATCTATTGTGTACATATATATTGTGATGCCCTAAAATGANANCCACNCCNGTAGTTCTAGCAAGACTAGGTGATGNNGT
GTGTTGGATGCTCGAAGCTGAAGCATCCTGTAATCTCGTTGTAAAATACAACTGAAGATCTAAANCAGTATATCGGATTG
ANAACTTGAAAGAACATATTCTTCTGCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis