Browse Element(s) Details


OsAffx.30076.1.S1_at

Description tigr:9637.m02601
TID=OsAffx.30076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2936011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29330NANA9+17798761..17804713retrotransposon protein, putative, unclassified
LOC_Os09g29340Os.28943.1.S1_x_at2/119+17805337..17807577retrotransposon protein, putative, unclassified
LOC_Os09g29350OsAffx.30075.1.S1_at11/119+17821799..17822254hypothetical protein
LOC_Os09g29360OsAffx.30076.1.S1_at11/119+17825478..17827459Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29370NANA9+17829901..17833915Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29380Os.14254.1.S1_at11/119+17834904..17837015expressed protein
LOC_Os09g29390Os.14537.1.S1_at11/119+17842410..17843627Blue copper protein precursor, putative, expressed
LOC_Os09g29404OsAffx.23081.1.S1_at11/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S1_at10/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S2_at8/119+17850430..17862821Isoamylase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30076.1.S1_at--447--591Chr09:17826196..17826220 (25 bp)
ATGCCGCCGTCCTACGCGCAAAGGG
LOC_Os09g29360
OsAffx.30076.1.S1_at--308--2311Chr09:17826378..17826398 (21 bp)
AAAGGGGTGATCAGGCGTCCATCGT
LOC_Os09g29360
OsAffx.30076.1.S1_at--259--2771Chr09:17826460..17826484 (25 bp)
AAGAGTTCCCGGCAATGCGCGGCCC
LOC_Os09g29360
OsAffx.30076.1.S1_at--254--3971Chr09:17826569..17826593 (25 bp)
CGGTGGCTCCCGTTGTGAACGAGTT
LOC_Os09g29360
OsAffx.30076.1.S1_at--430--8651Chr09:17826582..17826606 (25 bp)
TGTGAACGAGTTGCACGGCCGTGAC
LOC_Os09g29360
OsAffx.30076.1.S1_at--1136--8431Chr09:17826805..17826829 (25 bp)
GGCCACATGGTTCTCTACTCGTTCA
LOC_Os09g29360
OsAffx.30076.1.S1_at--1079--2111Chr09:17826809..17826833 (25 bp)
ACATGGTTCTCTACTCGTTCAGCCT
LOC_Os09g29360
OsAffx.30076.1.S1_at--11--6171Chr09:17827202..17827226 (25 bp)
GAGGATGATTGCCAGCTTACGTCTG
LOC_Os09g29360
OsAffx.30076.1.S1_at--225--91Chr09:17827209..17827233 (25 bp)
ATTGCCAGCTTACGTCTGTGGATGA
LOC_Os09g29360
OsAffx.30076.1.S1_at--1003--8651Chr09:17827225..17827249 (25 bp)
TGTGGATGAGATTGCAACCGCCGCT
LOC_Os09g29360
OsAffx.30076.1.S1_at--1058--2611Chr09:17827240..17827264 (25 bp)
AACCGCCGCTCATCAGATCATTGAG
LOC_Os09g29360
Target Sequence 
ATGCCGCCGTCCTACGCGCAAAGGGGTGATCAGGCGTCCATCGTCGGCGGCGCAATCAACTTCGTCAAGGAGCTGGAGCA
GCTGCTCCAGTCGCTGGAGGCGCGGAAGAGTTCCCGGCAATGCGCGGCCCACGACGCGGCGGCAGCGGCGGCGCCGTTCG
CCAGCTTCTTCACCTTCCCGCAGTACTCGATGAGCGCCGCCGCCGCCGCGGCGCCGGTGGCTCCCGTTGTGAACGAGTTG
CACGGCCGTGACGACGGCGGAGCAGGCACCGCCGAGGCCGAGGCGTCAGGGTCGAAGCCGTCGGCGGTGGCCGACGTCGA
GGTGACCATGGTGGAGAGCCACGCCAACCTGCGGGTGCTGTCACGGCGGCGGCCGAGGCAGCTGCTCCGGCTGGTGGTGG
CGCTGCAGGGCCACCGGCTCACCGTGCTCCACCTCAACATGACCAGCGCCGGCCACATGGTTCTCTACTCGTTCAGCCTC
AAGGTGGAGGATGATTGCCAGCTTACGTCTGTGGATGAGATTGCAACCGCCGCTCATCAGATCATTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis