Browse Element(s) Details


Os.14369.1.A1_a_at

Description gb:AK072357.1
DB_XREF= gi:32982380
TID=Os.14369.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.14369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU032464(S10552)~quinone oxidoreductase-like protein (OSJNBb0011E04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061I01, full insert sequence.
FL= gb:AK119345.1 gb:AK072357.1 gb:AK103923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2916011/115'-AMP-activated protein kinase beta-1 subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein
LOC_Os08g29150Os.24017.1.S1_at8/118+17711347..17718074Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os08g29160Os.14369.1.A1_a_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29160Os.14369.1.A2_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29170Os.14369.2.S1_at11/118+17722838..17724773Quinone oxidoreductase, putative, expressed
LOC_Os08g29180Os.47463.1.S1_x_at6/118+17738212..17751174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g29180Os.14491.2.S1_x_at5/118+17738212..17751174transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14369.1.A1_a_at--1043--5391Chr08:17722101..17722125 (25 bp)
GAAGCTGAAATTCGACTTCGACATG
LOC_Os08g29160
Os.14369.1.A1_a_at--894--3451Chr08:17722343..17722367 (25 bp)
CAGTGGAGGCACTCGACTTCATTGC
LOC_Os08g29160
Os.14369.1.A1_a_at--585--5691Chr08:17722357..17722381 (25 bp)
GACTTCATTGCCAACAGAGACTGAT
LOC_Os08g29160
Os.14369.1.A1_a_at--476--391Chr08:17722406..17722430 (25 bp)
ATCAGGGTTGGTGACATCGCTCGTA
LOC_Os08g29160
Os.14369.1.A1_a_at--360--9091Chr08:17722438..17722462 (25 bp)
TGCTCCCAGCCAACTGCAGATAAGG
LOC_Os08g29160
Os.14369.1.A1_a_at--32--9771Chr08:17722672..17722692 (21 bp)
TAAGGGACCCAACTGTTGTCAAGGT
LOC_Os08g29160
Os.14369.1.A1_a_at--156--7611Chr08:17722701..17722725 (25 bp)
GGGCACTAACTGAGGACGAGCGATT
LOC_Os08g29160
Os.14369.1.A1_a_at--82--6191Chr08:17722712..17722736 (25 bp)
GAGGACGAGCGATTCTTACTGGCCT
LOC_Os08g29160
Os.14369.1.A1_a_at--146--4771Chr08:17722739..17722763 (25 bp)
GCTGCACGCCGCATGGCATTTGCAA
LOC_Os08g29160
Os.14369.1.A1_a_at--1151--8271Chr08:17722753..17722777 (25 bp)
GGCATTTGCAATCTGCCCAATCAGA
LOC_Os08g29160
Os.14369.1.A1_a_at--1149--4371Chr08:17722769..17722793 (25 bp)
CCAATCAGATTGTCTCCCAAGCAAT
LOC_Os08g29160
Target Sequence 
GAAGCTGAAATTCGACTTCGACATGGGAAGTACTATTACAAATTCATAGCAGGGGGCCAGTGGAGGCACTCGACTTCATT
GCCAACAGAGACTGATGAACATGGGAATGTCAACAATGTTATCAGGGTTGGTGACATCGCTCGTATTCGGCCTGCTCCCA
GCCAACTGCAGATAAGGGACCCAACTGTTGTCAAGGTCATAGAGAGGGCACTAACTGAGGACGAGCGATTCTTACTGGCC
TTCGCTGCACGCCGCATGGCATTTGCAATCTGCCCAATCAGATTGTCTCCCAAGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14369.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis