Browse Element(s) Details


Os.14369.2.S1_at

Description gb:AK112013.1
DB_XREF= gi:37988676
TID=Os.14369.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU032464(S10552)~quinone oxidoreductase-like protein (OSJNBb0011E04.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C09, full insert sequence.
FL= gb:AK104318.1 gb:AK109433.2 gb:AK112013.1 gb:AK069608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2917011/11Quinone oxidoreductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29124Os.16065.2.S1_x_at11/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.5972.1.S1_at10/118+17689525..17705293expressed protein
LOC_Os08g29124Os.16065.1.S1_at9/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.14555.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29124OsAffx.9687.1.S1_at1/118+17689525..17705293expressed protein
LOC_Os08g29140OsAffx.5973.1.S1_at11/118+17709072..17709728hypothetical protein
LOC_Os08g29150Os.24017.1.S1_at8/118+17711347..17718074Phospholipid-transporting ATPase 9, putative, expressed
LOC_Os08g29160Os.14369.1.A1_a_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29160Os.14369.1.A2_at11/118+17719062..177248835'-AMP-activated protein kinase beta-1 subunit, putative, expressed
LOC_Os08g29170Os.14369.2.S1_at11/118+17722838..17724773Quinone oxidoreductase, putative, expressed
LOC_Os08g29180Os.47463.1.S1_x_at6/118+17738212..17751174transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g29180Os.14491.2.S1_x_at5/118+17738212..17751174transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14369.2.S1_at--466--8051Chr08:17723264..17723288 (25 bp)
GGAGAAGCTCAACCCATACCTGGAG
LOC_Os08g29170
Os.14369.2.S1_at--270--91Chr08:17723201..17723225 (25 bp)
ATTCGCCTTCTCACAGGTTGTGGAG
LOC_Os08g29170
Os.14369.2.S1_at--75--7631Chr08:17723143..17723167 (25 bp)
GGGAAAGTTGTCATCTCACCCATTC
LOC_Os08g29170
Os.14369.2.S1_at--1062--9671Chr08:17723128..17723152 (25 bp)
TCACCCATTCCATGAGAGCTTGACA
LOC_Os08g29170
Os.14369.2.S1_at--405--1371Chr08:17723095..17723119 (25 bp)
AGAGCTTATGATGGTCTCTCGCACC
LOC_Os08g29170
Os.14369.2.S1_at--721--3791Chr08:17723078..17723102 (25 bp)
CTCGCACCTGAGATTCTGATTCTGA
LOC_Os08g29170
Os.14369.2.S1_at--596--4191Chr08:17722943..17722967 (25 bp)
CCCTCTCTAGCAATGTCCAGTTGAT
LOC_Os08g29170
Os.14369.2.S1_at--824--8971Chr08:17722917..17722941 (25 bp)
TGAACAGGCAGGTGGTGCCCCGAAT
LOC_Os08g29170
Os.14369.2.S1_at--96--9171Chr08:17722902..17722926 (25 bp)
TGCCCCGAATGTCCCAATGTTACAT
LOC_Os08g29170
Os.14369.2.S1_at--1143--2911Chr08:17722858..17722882 (25 bp)
AAGGAACATCGATATACCGCGCCTC
LOC_Os08g29170
Os.14369.2.S1_at--865--4551Chr08:17722840..17722864 (25 bp)
GCGCCTCAGTTCGTCTTGAAAGGGC
LOC_Os08g29170
Target Sequence 
GGAGAAGCTCAACCCATACCTGGAGTCCGGGAAGGTGAAGCCGCTGGTGGACCCCAAGGGGCCATTCGCCTTCTCACAGG
TTGTGGAGGCCTTCTCCTACCTCGAGACAGGGAGAGCCACCGGGAAAGTTGTCATCTCACCCATTCCATGAGAGCTTGAC
ATCAATGGCAGAGCTTATGATGGTCTCTCGCACCTGAGATTCTGATTCTGAAGTGTGTCAGCATAGACCAAAATGAAGTT
TATCTCATATTACAGTTCATAGAGTTACACTGTTACACAAGTTGTATGCACTGTGATGAACTGCTGAGCAATGTCCACAA
CCCCTCTCTAGCAATGTCCAGTTGATTTGAACAGGCAGGTGGTGCCCCGAATGTCCCAATGTTACATGAGTTTTGCTATG
TAAGGGAAGGAACATCGATATACCGCGCCTCAGTTCGTCTTGAAAGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14369.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis