Browse Element(s) Details


Os.14537.1.S1_at

Description gb:AK059930.1
DB_XREF= gi:32969948
TID=Os.14537.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14537 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B02, full insert sequence.
FL= gb:AK059930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2939011/11Blue copper protein precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29350OsAffx.30075.1.S1_at11/119+17821799..17822254hypothetical protein
LOC_Os09g29360OsAffx.30076.1.S1_at11/119+17825478..17827459Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29370NANA9+17829901..17833915Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g29380Os.14254.1.S1_at11/119+17834904..17837015expressed protein
LOC_Os09g29390Os.14537.1.S1_at11/119+17842410..17843627Blue copper protein precursor, putative, expressed
LOC_Os09g29404OsAffx.23081.1.S1_at11/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S1_at10/119+17850430..17862821Isoamylase precursor, putative, expressed
LOC_Os09g29404Os.54050.1.S2_at8/119+17850430..17862821Isoamylase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14537.1.S1_at--296--1591Chr09:17843114..17843138 (25 bp)
AGCTCGCCGTGAACGTCAACGGTGA
LOC_Os09g29390
Os.14537.1.S1_at--736--2691Chr09:17843212..17843236 (25 bp)
AAGCTCGCGCTGTTCTGATGGCCGC
LOC_Os09g29390
Os.14537.1.S1_at--711--1691Chr09:17843272..17843296 (25 bp)
AGCCATGCAGGTTCTTGTCGATCGG
LOC_Os09g29390
Os.14537.1.S1_at--78--471Chr09:17843292..17843316 (25 bp)
ATCGGCCGTTGCACGTTGGTGACTC
LOC_Os09g29390
Os.14537.1.S1_at--226--2011Chr09:17843313..17843337 (25 bp)
ACTCGTGCAATGAAGCTGACCGTGT
LOC_Os09g29390
Os.14537.1.S1_at--235--2691Chr09:17843325..17843349 (25 bp)
AAGCTGACCGTGTTTCTTCTCGTTT
LOC_Os09g29390
Os.14537.1.S1_at--160--9511Chr09:17843342..17843366 (25 bp)
TCTCGTTTCTCGTGTGATTTGGTCA
LOC_Os09g29390
Os.14537.1.S1_at--821--8591Chr09:17843361..17843385 (25 bp)
TGGTCACCGTGCAACTCGTATGTAG
LOC_Os09g29390
Os.14537.1.S1_at--1056--7271Chr09:17843425..17843449 (25 bp)
GTGCCACTGGTGTATCGTCGTGTCT
LOC_Os09g29390
Os.14537.1.S1_at--788--7571Chr09:17843452..17843476 (25 bp)
GGGCTCTGGTTATGCATGCCATGGT
LOC_Os09g29390
Os.14537.1.S1_at--63--10811Chr09:17843595..17843619 (25 bp)
TTGTAATCACAGCTTGACCCCTCAA
LOC_Os09g29390
Target Sequence 
AGCTCGCCGTGAACGTCAACGGTGACCCGTCGTACTCTGCCGCCTCTTCGCCGGCGGCGGCGAGCGCTGTCGCCGCCGCG
GCAGCGGGGGCCCTGATCAAGCTCGCGCTGTTCTGATGGCCGCGGTGCATGCGAGCCAGGGTAGAGACAGTGCGTGGAAG
CCATGCAGGTTCTTGTCGATCGGCCGTTGCACGTTGGTGACTCGTGCAATGAAGCTGACCGTGTTTCTTCTCGTTTCTCG
TGTGATTTGGTCACCGTGCAACTCGTATGTAGTAATCACCTTAGTTTGTTGTGGTGATTCTAAATTTGCTTGTGCCACTG
GTGTATCGTCGTGTCTGGGGGCTCTGGTTATGCATGCCATGGTTTGTGTTGGTGAAATTTCTTATGGTGGGTATAAATAA
AACCAAGCATGTTAAAAACATGCTGGTGGTAATGGTATAGTCGTGGTTGTATAACTATACCGAAGTTTAATTACTTGACC
TTTGTAATCACAGCTTGACCCCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis