Browse Element(s) Details


Os.14719.1.S1_at

Description gb:AK103241.1
DB_XREF= gi:32988450
TID=Os.14719.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123H06, full insert sequence.
FL= gb:AK103241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1277011/11transfactor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12740NANA9+7305638..7306849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12750Os.6430.1.S1_at11/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12750OsAffx.7666.1.S1_at1/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12759NANA9+7327463..7327689NA
LOC_Os09g12770Os.14719.1.S1_at11/119+7328560..7332289transfactor, putative, expressed
LOC_Os09g12780OsAffx.29822.1.S1_at10/119+7333179..7333967expressed protein
LOC_Os09g12790OsAffx.17671.1.S1_at11/119+7335374..7339496calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os09g12800NANA9+7346193..7353032zinc finger family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14719.1.S1_at--1142--10511Chr09:7331707..7331731 (25 bp)
TTCTCCTACCGCTAGTCCAAAGCAT
LOC_Os09g12770
Os.14719.1.S1_at--1000--6671Chr09:7331830..7331854 (25 bp)
GTTCCAACAATGTTCCATGTCCTAC
LOC_Os09g12770
Os.14719.1.S1_at--71--2811Chr09:7331926..7331950 (25 bp)
AAGATCCGTGTTGTAGCTCTCAGTA
LOC_Os09g12770
Os.14719.1.S1_at--285--1191Chr09:7331950..7331974 (25 bp)
AGTATATTTCTAAGTCCCAATGGAG
LOC_Os09g12770
Os.14719.1.S1_at--488--2831Chr09:7332096..7332120 (25 bp)
AAGTTTGAAGGTTGCGCTTTGTCGC
LOC_Os09g12770
Os.14719.1.S1_at--818--2491Chr09:7332170..7332194 (25 bp)
AACATGAACAATTTTTCGCGTGTAA
LOC_Os09g12770
Os.14719.1.S1_at--332--10631Chr09:7332184..7332208 (25 bp)
TTCGCGTGTAATTTGTTGTAAACTT
LOC_Os09g12770
Os.14719.1.S1_at--101--2391Chr09:7332203..7332227 (25 bp)
AAACTTGTAATGGTCAGTGGTCAGA
LOC_Os09g12770
Os.14719.1.S1_at--511--1611Chr09:7332234..7332258 (25 bp)
AGCTGTTGATGTTATGCTGTTACAC
LOC_Os09g12770
Os.14719.1.S1_at--1009--4731Chr09:7332249..7332273 (25 bp)
GCTGTTACACTTGGATGTTACTATC
LOC_Os09g12770
Os.14719.1.S1_at--772--6771Chr09:7332265..7332289 (25 bp)
GTTACTATCATGGTTACTTTTCTCC
LOC_Os09g12770
Target Sequence 
TTCTCCTACCGCTAGTCCAAAGCATGAGAGGGCAGCAAAGAGGCAACGAGGTAATGGTGCAGAGTTCTCGGAAACTGACT
TCGCCCTTCCTCATTCTATCTTCGAGTCGAGTTCGGGGTCAGAGTTCCAACAATGTTCCATGTCCTACTCAGGTCATTAG
CATCTGGTGATACTCCTCACAGCATCTTCGCTAGCTTGTTCGAGACGAAGTAATGATCTAAGATCCGTGTTGTAGCTCTC
AGTAGTATATTTCTAAGTCCCAATGGAGATGTTGGTAGACAAAAATGTTGTAGGTGTTCAGATGATTGTTTACATGATAC
TACATATGACAGCTATTTAAGCTTGTAATTTCGTGGCCTGTAAATTTTATTATCAGCTGTTGAGTTGGGAAGTTTGAAGG
TTGCGCTTTGTCGCGGCGTCGACTTCTGCTCATCTGGGTAAATCTTTATTGACAAAAGTGTTTAACATGAACAATTTTTC
GCGTGTAATTTGTTGTAAACTTGTAATGGTCAGTGGTCAGAAGCACAAGCTGTTGATGTTATGCTGTTACACTTGGATGT
TACTATCATGGTTACTTTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis