Browse Element(s) Details


Os.6430.1.S1_at

Description gb:AK069336.1
DB_XREF= gi:32979360
TID=Os.6430.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023010K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010K22, full insert sequence.
FL= gb:AK069336.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1275011/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g12730Os.53930.1.S1_at11/119+7292011..7299542RNA recognition motif family protein, expressed
LOC_Os09g12740NANA9+7305638..7306849retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g12750Os.6430.1.S1_at11/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12750OsAffx.7666.1.S1_at1/119+7315075..7321298myb family transcription factor, putative, expressed
LOC_Os09g12759NANA9+7327463..7327689NA
LOC_Os09g12770Os.14719.1.S1_at11/119+7328560..7332289transfactor, putative, expressed
LOC_Os09g12780OsAffx.29822.1.S1_at10/119+7333179..7333967expressed protein
LOC_Os09g12790OsAffx.17671.1.S1_at11/119+7335374..7339496calcium-activated outward-rectifying potassium channel 6, putative, expressed
LOC_Os09g12800NANA9+7346193..7353032zinc finger family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0010088biological_processphloem histogenesis
GO:0010089biological_processxylem histogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6430.1.S1_at--748--8291Chr09:7320770..7320794 (25 bp)
GGCTTCAGCATCTCGGACAATGATC
LOC_Os09g12750
Os.6430.1.S1_at--809--2991Chr09:7320788..7320812 (25 bp)
AATGATCTCCCGGAGCTCTCTGGTG
LOC_Os09g12750
Os.6430.1.S1_at--776--9511Chr09:7320804..7320828 (25 bp)
TCTCTGGTGGTGTCATGTGCGGCTC
LOC_Os09g12750
Os.6430.1.S1_at--792--8691Chr09:7320819..7320843 (25 bp)
TGTGCGGCTCCGCTGACACATTGAG
LOC_Os09g12750
Os.6430.1.S1_at--871--8731Chr09:7320868..7320892 (25 bp)
TGTCAGCCCAATCAACCTGCATAGT
LOC_Os09g12750
Os.6430.1.S1_at--237--9051Chr09:7320885..7320909 (25 bp)
TGCATAGTCCTGAGGGCAAGCCGAC
LOC_Os09g12750
Os.6430.1.S1_at--512--8451Chr09:7320926..7320950 (25 bp)
GGCCAAATGATCCTCCAGAAGTCAC
LOC_Os09g12750
Os.6430.1.S1_at--39--1471Chr09:7320942..7320966 (25 bp)
AGAAGTCACCTGAGCTTAAGCGCAA
LOC_Os09g12750
Os.6430.1.S1_at--355--1651Chr09:7320960..7320984 (25 bp)
AGCGCAAGTCTTGCTGAGCCGTGTC
LOC_Os09g12750
Os.6430.1.S1_at--521--5871Chr09:7320975..7320999 (25 bp)
GAGCCGTGTCGTTCGACGCAATCTG
LOC_Os09g12750
Os.6430.1.S1_at--719--1171Chr09:7321139..7321163 (25 bp)
AGTAGCAAGGTTTTCTCTCTTATGT
LOC_Os09g12750
Target Sequence 
GGCTTCAGCATCTCGGACAATGATCTCCCGGAGCTCTCTGGTGGTGTCATGTGCGGCTCCGCTGACACATTGAGCTCCTC
CATCTTCCACCAGCTCTCTGTCAGCCCAATCAACCTGCATAGTCCTGAGGGCAAGCCGACGCCCTCGGGCATCGAAGGCC
AAATGATCCTCCAGAAGTCACCTGAGCTTAAGCGCAAGTCTTGCTGAGCCGTGTCGTTCGACGCAATCTGGATGTGCAAA
CACCAGTTTTCTTGTCATGGGGGTAGTCATGTCGAATTTCGGAATTCGAATTTCGGTAAGAAGGGGGGATGCTCTGCCAA
TCTTGTAGAGGCCATCTTGTTCTCTGGCTAATGCATGCCAACATTGTCAAGTAGCAAGGTTTTCTCTCTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis