Browse Element(s) Details


Os.14721.1.S1_at

Description gb:AK103563.1
DB_XREF= gi:32988772
TID=Os.14721.1
CNT=49
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.14721 (NCBI UniGene Cluster)
UG_TITLE=Glyoxalase II (GLXII) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132K06, full insert sequence.
FL= gb:AK070780.1 gb:AY054407.1 gb:AK103563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3410011/11Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34080OsAffx.30133.1.S1_at11/119+20115557..20116111hypothetical protein
LOC_Os09g34090OsAffx.17991.1.S1_at10/119+20116966..20121182NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein
LOC_Os09g34130Os.20730.1.S1_at11/119+20146717..20153743C2 domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019243biological_processmethylglyoxal catabolism to D-lactate
GO:0005737cellular_componentcytoplasm
GO:0004416molecular_functionhydroxyacylglutathione hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14721.1.S1_at--791--8211Chr09:20123247..20123271 (25 bp)
GGAATACGCTGCAAATGCCGCTGAT
LOC_Os09g34100
Os.14721.1.S1_at--1077--591Chr09:20123233..20123257 (25 bp)
ATGCCGCTGATCTCCGCAAGAGGAA
LOC_Os09g34100
Os.14721.1.S1_at--304--7351Chr09:20122440..20122464 (25 bp)
GTGCAATCCTTTTCTGAGGACCTCA
LOC_Os09g34100
Os.14721.1.S1_at--986--331Chr09:20122406..20122430 (25 bp)
ATAAAGAATACCCTGTCCATCCCAG
LOC_Os09g34100
Os.14721.1.S1_at--1009--6291Chr09:20122373..20122397 (25 bp)
GATGATGCACGCGTTCTTGAAGTTG
LOC_Os09g34100
Os.14721.1.S1_at--406--1191Chr09:20122194..20122218 (25 bp)
AGTTTGTTTCTAAAATGCTTCGGCA
LOC_Os09g34100
Os.14721.1.S1_at--78--9071Chr09:20122179..20122203 (25 bp)
TGCTTCGGCAAAATTGTGTCGCGGT
LOC_Os09g34100
Os.14721.1.S1_at--471--7231Chr09:20122162..20122186 (25 bp)
GTCGCGGTGTATGTAGCTTTTGGCA
LOC_Os09g34100
Os.14721.1.S1_at--1114--7031Chr09:20122131..20122155 (25 bp)
GTAAAATGTCGTCCAATAGCAGCTG
LOC_Os09g34100
Os.14721.1.S1_at--524--5071Chr09:20122113..20122137 (25 bp)
GCAGCTGGTGATTCTTTCTATCAAC
LOC_Os09g34100
Os.14721.1.S1_at--377--6411Chr09:20122075..20122099 (25 bp)
GATCTGTTATCATCAACTCTGTAAA
LOC_Os09g34100
Target Sequence 
GGAATACGCTGCAAATGCCGCTGATCTCCGCAAGAGGAATACACCCACGGTGCCAACAACAATTGGGAGAGAGAAGCAGT
GCAATCCTTTTCTGAGGACCTCAAGTCCAGAGATAAAGAATACCCTGTCCATCCCAGACCATTTTGATGATGCACGCGTT
CTTGAAGTTGTTCGACGAGCGAAGGATAACTTTTAACTAACCATAAAAAAGGAAAATTTCACGTCCATGACCCAATTGTC
ATGTTGAGGAGAGAAGCAGACAAAGAACTCCACAAGAGAAACAAAAGAACTACAAGGTATATGATGACTACATAAGATCG
AGCTAGTTTGTTTCTAAAATGCTTCGGCAAAATTGTGTCGCGGTGTATGTAGCTTTTGGCAGTGGTTGTAAAATGTCGTC
CAATAGCAGCTGGTGATTCTTTCTATCAACTACAAATAAGTGTGATCTGTTATCATCAACTCTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis