Browse Element(s) Details


OsAffx.30134.1.S1_at

Description tigr:9637.m02942
TID=OsAffx.30134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3412011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34090OsAffx.17991.1.S1_at10/119+20116966..20121182NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein
LOC_Os09g34130Os.20730.1.S1_at11/119+20146717..20153743C2 domain-containing protein, putative, expressed
LOC_Os09g34140Os.8469.1.S1_at11/119+20155974..20157770expressed protein
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30134.1.S1_at--502--4491Chr09:20145389..20145413 (25 bp)
GCCGGACTGCGTGAAGTGCTTCGAC
LOC_Os09g34120
OsAffx.30134.1.S1_at--1045--8991Chr09:20145400..20145424 (25 bp)
TGAAGTGCTTCGACGCGCTGTGGTT
LOC_Os09g34120
OsAffx.30134.1.S1_at--314--8671Chr09:20145418..20145442 (25 bp)
TGTGGTTCTGCTACTCGCCGTACTA
LOC_Os09g34120
OsAffx.30134.1.S1_at--397--2011Chr09:20145439..20145463 (25 bp)
ACTACCAGCTGCAGAACTACTACCG
LOC_Os09g34120
OsAffx.30134.1.S1_at--849--9011Chr09:20145448..20145472 (25 bp)
TGCAGAACTACTACCGGCACGGCGA
LOC_Os09g34120
OsAffx.30134.1.S1_at--320--8251Chr09:20145463..20145487 (25 bp)
GGCACGGCGAGTTCGACAACTGCTT
LOC_Os09g34120
OsAffx.30134.1.S1_at--450--6711Chr09:20145473..20145497 (25 bp)
GTTCGACAACTGCTTCGGCAAGTGG
LOC_Os09g34120
OsAffx.30134.1.S1_at--1017--3771Chr09:20145504..20145528 (25 bp)
CTCGTCGACTGTCTCTGGCTCAAGA
LOC_Os09g34120
OsAffx.30134.1.S1_at--222--6231Chr09:20145612..20145636 (25 bp)
GAGGCCTCCGACAACTGGCTGCGGA
LOC_Os09g34120
OsAffx.30134.1.S1_at--1023--4095Chr12:3974761..3974780 (20 bp)
CGACAACTGGCTGCGGATGTACGGC
NONE
OsAffx.30134.1.S1_at--745--7851Chr09:20145634..20145658 (25 bp)
GGATGTACGGCCACCTTGTCGGCCT
LOC_Os09g34120
Target Sequence 
GCCGGACTGCGTGAAGTGCTTCGACGCGCTGTGGTTCTGCTACTCGCCGTACTACCAGCTGCAGAACTACTACCGGCACG
GCGAGTTCGACAACTGCTTCGGCAAGTGGGGGGACCTCGTCGACTGTCTCTGGCTCAAGACGAGGCGCGCGGCGGAGGCG
GAGGAGATCCTCGCCGCCAGGGAGAAGGCCCGGCCGCACATCTGGACCTACCGCACCGTCGACGAGGCCTCCGACAACTG
GCTGCGGATGTACGGCCACCTTGTCGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis