Browse Element(s) Details


Os.49413.1.A1_x_at

Description gb:AK100778.1
DB_XREF= gi:32985987
TID=Os.49413.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49413 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120F15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120F15, full insert sequence.
FL= gb:AK100778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3415011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein
LOC_Os09g34120OsAffx.30134.1.S1_at11/119+20145330..20145839expressed protein
LOC_Os09g34130Os.20730.1.S1_at11/119+20146717..20153743C2 domain-containing protein, putative, expressed
LOC_Os09g34140Os.8469.1.S1_at11/119+20155974..20157770expressed protein
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein
LOC_Os09g34180Os.6745.1.S1_at11/119+20179233..20182541FH protein NFH2, putative, expressed
LOC_Os09g34190Os.9110.1.S1_at11/119+20182857..20185813thioesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49413.1.A1_x_at--663--10011Chr09:20157747..20157771 (25 bp)
TAGCAGGGACATGTTCAAGAATCTC
LOC_Os09g34150
Os.49413.1.A1_x_at--248--3051Chr09:20157721..20157745 (25 bp)
AATCGCTTCATATTCAAGGGCTGGA
LOC_Os09g34150
Os.49413.1.A1_x_at--22--2871Chr09:20157706..20157730 (25 bp)
AAGGGCTGGAAAACCTCGAGACTCT
LOC_Os09g34150
Os.49413.1.A1_x_at--1124--1051Chr09:20157547..20157571 (25 bp)
AGGGTGACAAACCACATCTGCAGAA
LOC_Os09g34150
Os.49413.1.A1_x_at--53--5991Chr09:20157480..20157504 (25 bp)
GAGACGCCCTAAGCTTCAAATTGTT
LOC_Os09g34150
Os.49413.1.A1_x_at--170--9751Chr09:20157456..20157480 (25 bp)
TAATTCCATGTCAGGGAGGAGCCCA
LOC_Os09g34150
Os.49413.1.A1_x_at--53--5871Chr09:20157438..20157462 (25 bp)
GAGCCCAAGGGCTAATACTATTGTA
LOC_Os09g34150
Os.49413.1.A1_x_at--640--231Chr09:20157388..20157412 (25 bp)
ATATTTGCCCATCCCAATAGTTTCT
LOC_Os09g34150
Os.49413.1.A1_x_at--199--291Chr09:20157372..20157396 (25 bp)
ATAGTTTCTGTATTTCGTTTCTCAA
LOC_Os09g34150
Os.49413.1.A1_x_at--73--6171Chr09:20157345..20157369 (25 bp)
GAGGATACCCCTATCAGAATCTGTA
LOC_Os09g34150
Os.49413.1.A1_x_at--660--5251Chr09:20157329..20157353 (25 bp)
GAATCTGTAATCTCTTTTAGCATTT
LOC_Os09g34150
Target Sequence 
TAGCAGGGACATGTTCAAGAATCTCAAATCGCTTCATATTCAAGGGCTGGAAAACCTCGAGACTCTGAATTTTGAGAAAA
GTGCAGCGGATAGGCTTGAGAAACTTNTAGTGAAGAAATGTTTTGCATTGAGCGACAACGAACGGGGAATATCTGATATA
CTGTTCCTAAAGAACATAGTTGAAATTACCCTGATAAGTAAGGGTGACAAACCACATCTGCAGAAGGGATTGCAAAGGCA
AGTTAGTGAATTTGAGCTTGTCAATANGAGACGCCCTAAGCTTCAAATTGTTAATTCCATGTCAGGGAGGAGCCCAAGGG
CTAATACTATTGTAGGATAAAAGAAAGGAAATAACACAAATATTTGCCCATCCCAATAGTTTCTGTATTTCGTTTCTCAA
TAGAGGATACCCCTATCAGAATCTGTAATCTCTTTTAGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49413.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis