Browse Element(s) Details


Os.9110.1.S1_at

Description gb:AK071305.1
DB_XREF= gi:32981328
TID=Os.9110.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026M15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088I03, full insert sequence.
FL= gb:AK071305.1 gb:AK101141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3419011/11thioesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34150Os.49413.1.A1_x_at11/119+20157225..20161527NB-ARC domain containing protein, expressed
LOC_Os09g34160OsAffx.30135.1.S1_at11/119+20162189..20167295NB-ARC domain containing protein, expressed
LOC_Os09g34170NANA9+20171841..20172152hypothetical protein
LOC_Os09g34180Os.6745.1.S1_at11/119+20179233..20182541FH protein NFH2, putative, expressed
LOC_Os09g34190Os.9110.1.S1_at11/119+20182857..20185813thioesterase family protein, expressed
LOC_Os09g34200Os.50484.1.S1_at11/119+20186675..20191104F-box domain containing protein
LOC_Os09g34200OsAffx.30137.1.S1_at10/119+20186675..20191104F-box domain containing protein
LOC_Os09g34214OsAffx.32335.1.S1_x_at3/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os09g34214Os.26688.1.S3_s_at1/119+20196229..20203371UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9110.1.S1_at--25--8031Chr09:20183732..20183756 (25 bp)
GGAGGTTTCTTGATGCACCGAGCAT
LOC_Os09g34190
Os.9110.1.S1_at--500--5911Chr09:20183705..20183729 (25 bp)
GAGCTTGCCTTCTCAACTGCATATG
LOC_Os09g34190
Os.9110.1.S1_at--509--7591Chr09:20183672..20183696 (25 bp)
GGGCAAAGACCTTGCTTTCTTGAAG
LOC_Os09g34190
Os.9110.1.S1_at--158--1171Chr09:20183400..20183424 (25 bp)
AGTCATGTGTCTTGTATACCCAGCT
LOC_Os09g34190
Os.9110.1.S1_at--1093--5931Chr09:20183365..20183389 (25 bp)
GAGCAGCCTCTGGTCAATGTTGAAG
LOC_Os09g34190
Os.9110.1.S1_at--39--7051Chr09:20183329..20183353 (25 bp)
GTAACAAGGCCTGAGCTCCGGAAGA
LOC_Os09g34190
Os.9110.1.S1_at--772--1371Chr09:20183191..20183331 (25 bp)
AGAGCGAGGTTTCCAACACATTCCA
LOC_Os09g34190
Os.9110.1.S1_at--829--8991Chr09:20183125..20183149 (25 bp)
TGAAGATACGCCATGTTGTTCCCTC
LOC_Os09g34190
Os.9110.1.S1_at--357--6131Chr09:20183057..20183081 (25 bp)
GAGGGTTTGTTCGACTAGTCCTGCA
LOC_Os09g34190
Os.9110.1.S1_at--544--10051Chr09:20183042..20183066 (25 bp)
TAGTCCTGCAGAACCGCTTGTTTCA
LOC_Os09g34190
Os.9110.1.S1_at--721--4931Chr09:20183027..20183051 (25 bp)
GCTTGTTTCAGCCACATGTCTTTTT
LOC_Os09g34190
Target Sequence 
GGAGGTTTCTTGATGCACCGAGCATTTGAGCTTGCCTTCTCAACTGCATATGCCTTTGTTGGGCAAAGACCTTGCTTTCT
TGAAGTTGATCATGTTGACTTCTTAAAACCAGTGGATGTAGGAGACTTTCTTCGATTCAAGTCATGTGTCTTGTATACCC
AGCTCGACAATGCAGAGCAGCCTCTGGTCAATGTTGAAGTTGTTGCTCATGTAACAAGGCCTGAGCTCCGGAAGAGCGAG
GTTTCCAACACATTCCACTTCACCTTCACCGTCTGCAGCGATGCATTGAAGAACGGACTGAAGATACGCCATGTTGTTCC
CTCTACTGAAGAAGAGGCACGGCGCATATTAGAGCGCATGGACGCAGAGGGTTTGTTCGACTAGTCCTGCAGAACCGCTT
GTTTCAGCCACATGTCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis