Browse Element(s) Details


OsAffx.32335.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rps8
TID=OsAffx.32335.1
CNT=1
FEA=DNA_63
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein S8 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ribosomal protein S8
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5794411/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os09g342143/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed
LOC_Os01g57974OsAffx.32214.1.S1_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.26050.2.S2_x_at11/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_x_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.32225.1.S1_at8/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.23039.1.S1_x_at1/111+33851621..33862024retrotransposon protein, putative, unclassified
LOC_Os01g57974OsAffx.2020.1.S1_at1/111+33851621..33862024retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32335.1.S1_x_at--149--24910Chr09:20197588..20197612 (25 bp)
AACAGATATTTCTTGGTTTCAACTT
LOC_Os09g34214
OsAffx.32335.1.S1_x_at--665--78711Chr09:20197602..20197626 (25 bp)
GGTTTCAACTTTGCGACATCAAAAG
LOC_Os09g34214
OsAffx.32335.1.S1_x_at--1047--103510Chr09:20197664..20197684 (21 bp)
TTTTAAAGCGTATCAGCCGACCTGG
LOC_Os09g34214
OsAffx.32335.1.S1_x_at--739--1679Chr09:11949764..11949788 (25 bp)
AGCCGACCTGGCTTACGAATTTATG
NONE
OsAffx.32335.1.S1_x_at--30--4899Chr09:11949774..11949798 (25 bp)
GCTTACGAATTTATGCCAACTATCA
NONE
OsAffx.32335.1.S1_x_at--47--5910Chr09:11949786..11949810 (25 bp)
ATGCCAACTATCAAGGAATTCCTAA
NONE
OsAffx.32335.1.S1_x_at--351--102310Chr09:11949814..11949838 (25 bp)
TTTGGGCGGAATGGGAATTGCTATT
NONE
OsAffx.32335.1.S1_x_at--424--86511Chr09:11949825..11949849 (25 bp)
TGGGAATTGCTATTCTTTCTACTTC
NONE
OsAffx.32335.1.S1_x_at--677--1111Chr09:11949836..11949860 (25 bp)
ATTCTTTCTACTTCTCGAGGTATAA
NONE
OsAffx.32335.1.S1_x_at--542--6899Chr08:9260284..9260308 (25 bp)
GTATAATGACAGATCGAGAAGCTCG
NONE
OsAffx.32335.1.S1_x_at--547--9378Chr08:9260297..9260321 (25 bp)
TCGAGAAGCTCGACTAAACAGAATT
NONE
Target Sequence 
AACAGATATTTCTTGGTTTCAACTTTGCGACATCAAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGAACCTTTTT
AAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAATGGGAATTG
CTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32335.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis