Browse Element(s) Details


Os.33418.1.S1_at

Description gb:AK070450.1
DB_XREF= gi:32980474
TID=Os.33418.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein kinase-like (P0557A01.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048N16, full insert sequence.
FL= gb:AK070450.1 gb:AK100639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5794011/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33418.1.S1_at--780--5111Chr01:33823262..33823286 (25 bp)
GCACAGGTGACCATAGAGGAGTAAC
LOC_Os01g57940
Os.33418.1.S1_at--1016--1311Chr01:33823276..33823300 (25 bp)
AGAGGAGTAACAGCCTAGCAGGGAA
LOC_Os01g57940
Os.33418.1.S1_at--319--3891Chr01:33823317..33823341 (25 bp)
CTGTCTGCTCTCTTGAATTTCTTGT
LOC_Os01g57940
Os.33418.1.S1_at--598--4811Chr01:33823323..33823347 (25 bp)
GCTCTCTTGAATTTCTTGTGTAATG
LOC_Os01g57940
Os.33418.1.S1_at--404--7071Chr01:33823342..33823366 (25 bp)
GTAATGTACACCACCTAGGCAGGAT
LOC_Os01g57940
Os.33418.1.S1_at--607--3371Chr01:33823353..33823377 (25 bp)
CACCTAGGCAGGATGTAACAGCAAC
LOC_Os01g57940
Os.33418.1.S1_at--957--7991Chr01:33823363..33823387 (25 bp)
GGATGTAACAGCAACAAGTCGATGT
LOC_Os01g57940
Os.33418.1.S1_at--995--7211Chr01:33823380..33823404 (25 bp)
GTCGATGTTGACTGGTACTTGGTCT
LOC_Os01g57940
Os.33418.1.S1_at--556--5731Chr01:33823389..33823413 (25 bp)
GACTGGTACTTGGTCTGTTCGTCAG
LOC_Os01g57940
Os.33418.1.S1_at--494--2071Chr01:33823396..33823420 (25 bp)
ACTTGGTCTGTTCGTCAGGATTCAT
LOC_Os01g57940
Os.33418.1.S1_at--549--4011Chr01:33823408..33823432 (25 bp)
CGTCAGGATTCATTACCAGGTTATT
LOC_Os01g57940
Target Sequence 
GCACAGGTGACCATAGAGGAGTAACAGCCTAGCAGGGAAGGGAGGAGCTGCAGGACTGTCTGCTCTCTTGAATTTCTTGT
GTAATGTACACCACCTAGGCAGGATGTAACAGCAACAAGTCGATGTTGACTGGTACTTGGTCTGTTCGTCAGGATTCATT
ACCAGGTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis