Browse Element(s) Details


Os.34845.1.S1_at

Description gb:AK069910.1
DB_XREF= gi:32979934
TID=Os.34845.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0557A01.7 (P0557A01.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037H06, full insert sequence.
FL= gb:AK069910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5793010/11CDP-alcohol phosphatidyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57880Os.45893.1.S1_at10/111+33795421..33796840Plastocyanin-like domain containing protein, expressed
LOC_Os01g57890Os.18390.1.S1_a_at11/111+33798748..33805306START domain containing protein, expressed
LOC_Os01g57900Os.32277.1.S1_at11/111+33805833..33808190pentatricopeptide, putative, expressed
LOC_Os01g57910OsAffx.11639.1.S1_at11/111+33808778..33811037YOR3513c, putative
LOC_Os01g57920OsAffx.11640.1.S1_at11/111+33811634..33814672F-box domain containing protein, expressed
LOC_Os01g57930Os.34845.2.S1_x_at11/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57930Os.34845.1.S1_at10/111+33816133..33819807CDP-alcohol phosphatidyltransferase family protein, expressed
LOC_Os01g57940Os.33418.1.S1_at11/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57940OsAffx.23830.2.S1_at1/111+33821456..33823540Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.2.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32335.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32334.1.S1_s_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32333.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32331.1.S1_x_at11/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26688.1.S3_s_at10/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944OsAffx.32332.1.S1_x_at9/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57944Os.26455.1.S1_at2/111+33827640..33830330DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g57950OsAffx.32337.1.S1_x_at11/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57950Os.26688.1.S2_s_at10/111+33830617..3383146050S ribosomal protein L14, putative
LOC_Os01g57960OsAffx.2355.1.S1_at1/111+33833519..33835701retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006661biological_processphosphatidylinositol biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0009507cellular_componentchloroplast
GO:0008444molecular_functionCDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008808molecular_functioncardiolipin synthase activity
GO:0017169molecular_functionCDP-alcohol phosphatidyltransferase activity
GO:0030572molecular_functionphosphatidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34845.1.S1_at--904--3991Chr01:33816793..33816817 (25 bp)
CGTGTGTTTGTTTCATCGCTGATGA
LOC_Os01g57930
Os.34845.1.S1_at--550--391Chr01:33816652..33816788 (25 bp)
ATCACGTCTTTGTTGTTGTTTGTCA
LOC_Os01g57930
Os.34845.1.S1_at--984--6331Chr01:33816573..33816597 (25 bp)
GATGCTTTATATGTTAGGCCTAGGA
LOC_Os01g57930
Os.34845.1.S1_at--51--8311Chr01:33816500..33816524 (25 bp)
GGCTAAGAGCTCAGATCGGATACTA
LOC_Os01g57930
Os.34845.1.S1_at--257--10191Chr01:33816450..33816474 (25 bp)
TATAGTTTCGTCCATATCGGCTCTG
LOC_Os01g57930
Os.34845.1.S1_at--842--491Chr01:33816435..33816459 (25 bp)
ATCGGCTCTGATGTCGGGTGTTCAA
LOC_Os01g57930
Os.34845.1.S1_at--966--7711Chr01:33816420..33816444 (25 bp)
GGGTGTTCAACTGTACATATCTGTT
LOC_Os01g57930
Os.34845.1.S1_at--764--7911Chr01:33816348..33816372 (25 bp)
GGTTGATCGGTGTTTGTCTTGCCCA
LOC_Os01g57930
Os.34845.1.S1_at--570--3771NONE
CTCTCTCTGGATGGCTTAGTTTCAT
NONE
Os.34845.1.S1_at--215--10111Chr01:33816232..33816256 (25 bp)
TATGGTTATTTTACGGCCTGCAGAC
LOC_Os01g57930
Os.34845.1.S1_at--867--6851Chr01:33816194..33816218 (25 bp)
GTATTCCCGTATTTCACGGCACTTA
LOC_Os01g57930
Target Sequence 
CGTGTGTTTGTTTCATCGCTGATGAGAACATCACGTCTTTGTTGTTGTTTGTCAAGCATTTGGAGCAAGACACTGAAGGA
AGAGGCCAGACTTCTGAATGAATCAGCTGATGCTTTATATGTTAGGCCTAGGAACACTAGTTAGATTTGGAAGTTTTTTT
TCATAATATCACTGTTTTTTTGGCTAAGAGCTCAGATCGGATACTAGAGGGCGATGTAGCAGAACTTTGTCTATAGTTTC
GTCCATATCGGCTCTGATGTCGGGTGTTCAACTGTACATATCTGTTTTGTAGTACTGTTTTATAGAGAGAATCACGACTG
GTGGAAGCTGGCTGGTTGATCGGTGTTTGTCTTGCCCATGCCTCTCTCTGGATGGCTTAGTTTCATAATTTGGTGTTTTA
TAGAGAGAAAAGACATCTGCAGATGGTTTCATAGTAATTTTCAGGGCATTATGGTTATTTTACGGCCTGCAGACCGCGAC
TGGAAATGTATTCCCGTATTTCACGGCACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis